Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2570 ATGGCTTCTTCTGGGAATCCAAATCAACAACAACAAACTACCCATTTTGATTTCCAGAAGCTTTTCAAGGCAACACCACCACCTTCAATCCCTAATCCTTTGAACTCTTCTCCTTCATTCCCTGCTCCTTCTCCTTCCACACCACCTCCTTCTTCATACCCTACACCTTCTTCTTCTTACCCTCCACCCACTGGCACAAACCCTTATCATTTTCCTCACTATCTTCCTCCTTTCACAAACCTCCACCACCATAACCAGCAAGAACAACAACAACAACAACAACAACAACAACAACAACACCACCCTCTTATCTTCCATAACCTCCCTCAAATGCATGCTCCTCAGAGACCCATTTTTCAACCCCCTTCTTCCTCTTCACCTTCATCACCCCATCTCCCATCATCCCCAAATCCCAATACCAATACCAATACCAATACCAATACCAATACCAATACCACCTCTGGTGCAAGGTTAATGGCTATGTTGAACACCCAAAACCCTCAATCCAATCCATCTTCATCAGCAGCAGCACCATCAATACAACCTGCTGTTTCTGAATTCTTAATGCCACCTAATCCTGCTGTGATGGCCTCAGCTTCTTCTCCTGTGAATCTGGCTAGCCCTCAGTCTTCCACTCCAGTAAGGATGATGAGTACCAAGATTCCTAAGGGGCGCCATTTGATTGGAGAGCATGTTGTTTATGACATTGATGTTAGGTTGCAAGGGGAGGTGCAGCCTCAGCTTGAAGTCACTCCAATCACCAAGTATGCCTCTGATCCTGGACTTGTGCTTGGCCGTCAAATTGCAGTGAATAGATCTTACATATGCTATGGACTCAAACTTGGTGCCATCCGGGTTCTTAATATCAATACTGCATTAAGATATTTGCTTCGAGGTCATACTCAGAGAGTAACAGACATGGCTTTCTTCGCTGAGGATCTTCACCTATTGGCAAGTGCTAGCACTGATGGGACAATTTTTGTATGGAGAATCAATGAGGGCCCTGATGAGGAAGACAAGCCTCAAATTACTGGAAAAGTTATCCTAGCCATTCAGATGTTAGGAGATAGTGAGTCAGTTCATCCACGAGTATGCTGGCATCCCCACAAACAAGAGATTTTAATAGTTGCTATTGGAAACCGTGTCCTCAAAATTGACACTATGAAAGCTGGGAAAGGTGAAAAATTTTCCGCAGAGGAGCCTCTCAAATGTAACATTGATAAATTGATTGATGGGGTGCACCTCATTGGTAAGCATGACGGTAATGTCACTGAATTGTCAATGTGCCAATGGATGAAGAGTCGATTAGCTTCAGCATCTGCAGATGGCACGGTAAAGATATGGGAAGAACGGAAGGCAACACCACTTGCTGTTTTAAGACCGTATGATGGTAAACCTGTTGATTCTGTGACATTCTTGACAGCTCCTCACCGCCCTGATCATATCATTCTTATCACAGTGGGGCCTCTAAATCGGGAAGTGAAGATATGGGTATCTGACAATGAGGAAGGCTGGCTATTACCTAGTGATTCTGAGTCATGGAATTGTATTCAGACTTTGGATATTAAAAGTTCTTCTGAACCCAACCCTGAGGATGCATTCTTTAATCAAGTTGTAGCATTGCCTCGTGCTGGTTTGTTTCTGCTAGCAAATGCCAAGAAAAATACAATATATGCTGTGCACATAGAATTTGGAACCAATCCAACTGCTACCCGCTTGGATTACATTGCTGAGTTCACAGTCACAATGCCTATATTAAGTCTTACTGGAACTAGTGATAGTTTACCGGATGGAGACCACATTGTACAGATATATTGTGTCCAAACACAAGCTATTCAGCAATATGGACTCACTTTGTCACAGTGTTTGCCTCCTCCCCTGGACAATGTTGAACTTGAAAAAATAGAATCCTCTCGTGATTTTGATGCTTTGGATGGTTCTACTAATCAAGAAGCTGGAAATATGCCACAAGCTGGAAATATGGATGGTTCTGAAAGTGCTGTCATACGCCCATCTGAAAGTTTGGCTTCTCCGGATACTTCGGGTCTGCCTGAAACTTCAATACCAGATACAGAGACCAAGCCAAATGATTTATCATCTCATAATGGTTTTGATCATATCCATACTGCTCCACCTCCACTTCCTCTCAGTCCAAGTTTATCACAAAAGTTACCTGGTTCCAAAAGTTCAAATAATTTAGAGACTAGTTCAACAAGTACTGATCACATCAATGAGCAGCAGAGAAATTTTGATTCTTCCACTGAACAGATAATAGAGTCAGGAAAAGATAATGTGGCTGAAATGCCTGCATCAAGTGACAATTTGCAAAATACTGACAAAGTTGTACAGGATGATGTTTCTGTGGTTTCTAATTCTCCTACAGTATTTAAACATCCAACCCATTTGGTAACTCCATCTGAGATAGCCTCTAAAGCTGCTTTATCTTCTGAGAATTCCTATGCTTCTGATTGTATGAATGTTCAAGATGTGACTTCCCACAGAGATGCAGAAAAGTATGAAGTAGAGGTTAAAGTGGTAGGAGAGACCGGCTCTAATCAAGAAAATAATGAGCATGACAGGGACAGAAACCTACAGACCAATGTTAATGAAAAGAAAGAGAAGTTATTCTATTCTCAGGCCTCCGATTTGGGCATTCAGATGGCCAGAGATACCTATAACAATGAGGTAGTTCATCAGCCTGATAATATTAATACTATTGGTGCACCTGATCAAAGCTGTAGCTCTATTGGGCAAGAAGTTAAAAACACAAGTAAGGAGGCACCTGCAAACATCAGTGAATCAGAAACTGTGGCTGCTACTTTGCTGTCTCCTGCACCAGCCGTGAAAAGTAAAAAACAGAAAGGAAAAAGTTCTCAAGTGTCTGCTACATCTTCCCCTTCTCCAAGTCCTTTTAATTCGACAGATTCATCAAATGATCAAGGTGGAAATCCACGAGGCTCATCAATGGAGGTTGCTTCACCACAGTTATCCAGTATGCAGGAGATGATGGGCCAGTTATTAAGCATGCATAAAGAAATGCAAAAGCAGATGAATGTGATGGTCTCTGCCCCAGTTACCAAGGAAGGCAAAAGATTGGAAGTATCATTGGGTCGAGCCATGGAGAAAGCTGTGAAGTCTAACACTGATGCTTTATGGGCTCGTTTACAAGAAGAAAGTGCAAAGCAAGAGAAGTTAGAGCGAGAAAATATGCAGCAAATAACAAATATGATCTCCAATTTCATAAACAAGGATATGCCATCTCTGTTGGAGAAAATCATTAAGAAGGAAATATCTTCAATTGGAACAACCATTACCCGTTCGATTGGTCACATTATAGAGAAAGCAATATCATCAGCTGTTATGGAGTCATTCCAGAAGGGGGTGGGAGATAAGGTACTGAATCAACTAGAAAAATCAGTTAGTTCGAAACTTGAGGCTACAGTGGCTAGGCAGATACAAGCACAATTTCAAACTTCTGGCAAGCAAGCTCTTCAGGAATCACTTAAGACTTGTTTGGAAGCTTCAGTTATCCCTGCATTTGAGATGTCTTGCAAAGCCATGTTTGAACAGATTGACGTCACATTTCAGAATGGACTTTTGAAGCACACTACTGCTATTCAACAGCAGTATGATTCTACTCATTCTCCACTCGCCATCACTTTGAGGGATACAATTAATTCAGCATCATCAATCACACAAACATTGAGTGGGCAATTGGCCGATGGTCAACGTAAACTGTTAGAAATGGCAGCTAACTCCAAAGTAGCGGCAGATCCCTTCGTGACACAAATCAATAATGGCTTGCATGAGATGACTGAGGATCCTACCAAAGAACTGTCAAGGTTAATTGGTGAGGGAAAATTTGAGGAAGCATTTACTGGAGCCCTTCATAGAAATGATGTTTCAATAGTTTCATGGGTGTGTTCTCAGGTTGATTTATCTGGTCTCTTAACAATGGTGCCACTGCCATTAAGCCAAGGAGTACTTCTAGCACTTCTACAACAATTGTCCTGTGACATCAATCAAGAGACACCCAAAAAATTGGCATGGATGACAGATGTGGCTGCTGCTTTAAACCCAGCAGATCAAAGGATTGCACAGCATGTAAGGCCAATACTGGATCAAGTGTCCCTGACTCTTAGCCATCGCCGGAATTTACCCAATGCCCCTCCTTCAGAAGCGAGCACAATTCGTCTTCTCATGCATGTTGTAAACTCGATTTTATTGAGCTGTAAATGA 4239 0.4201 MASSGNPNQQQQTTHFDFQKLFKATPPPSIPNPLNSSPSFPAPSPSTPPPSSYPTPSSSYPPPTGTNPYHFPHYLPPFTNLHHHNQQEQQQQQQQQQQQHHPLIFHNLPQMHAPQRPIFQPPSSSSPSSPHLPSSPNPNTNTNTNTNTNTNTTSGARLMAMLNTQNPQSNPSSSAAAPSIQPAVSEFLMPPNPAVMASASSPVNLASPQSSTPVRMMSTKIPKGRHLIGEHVVYDIDVRLQGEVQPQLEVTPITKYASDPGLVLGRQIAVNRSYICYGLKLGAIRVLNINTALRYLLRGHTQRVTDMAFFAEDLHLLASASTDGTIFVWRINEGPDEEDKPQITGKVILAIQMLGDSESVHPRVCWHPHKQEILIVAIGNRVLKIDTMKAGKGEKFSAEEPLKCNIDKLIDGVHLIGKHDGNVTELSMCQWMKSRLASASADGTVKIWEERKATPLAVLRPYDGKPVDSVTFLTAPHRPDHIILITVGPLNREVKIWVSDNEEGWLLPSDSESWNCIQTLDIKSSSEPNPEDAFFNQVVALPRAGLFLLANAKKNTIYAVHIEFGTNPTATRLDYIAEFTVTMPILSLTGTSDSLPDGDHIVQIYCVQTQAIQQYGLTLSQCLPPPLDNVELEKIESSRDFDALDGSTNQEAGNMPQAGNMDGSESAVIRPSESLASPDTSGLPETSIPDTETKPNDLSSHNGFDHIHTAPPPLPLSPSLSQKLPGSKSSNNLETSSTSTDHINEQQRNFDSSTEQIIESGKDNVAEMPASSDNLQNTDKVVQDDVSVVSNSPTVFKHPTHLVTPSEIASKAALSSENSYASDCMNVQDVTSHRDAEKYEVEVKVVGETGSNQENNEHDRDRNLQTNVNEKKEKLFYSQASDLGIQMARDTYNNEVVHQPDNINTIGAPDQSCSSIGQEVKNTSKEAPANISESETVAATLLSPAPAVKSKKQKGKSSQVSATSSPSPSPFNSTDSSNDQGGNPRGSSMEVASPQLSSMQEMMGQLLSMHKEMQKQMNVMVSAPVTKEGKRLEVSLGRAMEKAVKSNTDALWARLQEESAKQEKLERENMQQITNMISNFINKDMPSLLEKIIKKEISSIGTTITRSIGHIIEKAISSAVMESFQKGVGDKVLNQLEKSVSSKLEATVARQIQAQFQTSGKQALQESLKTCLEASVIPAFEMSCKAMFEQIDVTFQNGLLKHTTAIQQQYDSTHSPLAITLRDTINSASSITQTLSGQLADGQRKLLEMAANSKVAADPFVTQINNGLHEMTEDPTKELSRLIGEGKFEEAFTGALHRNDVSIVSWVCSQVDLSGLLTMVPLPLSQGVLLALLQQLSCDINQETPKKLAWMTDVAAALNPADQRIAQHVRPILDQVSLTLSHRRNLPNAPPSEASTIRLLMHVVNSILLSCK* 1413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2570 1412 SUPERFAMILY WD40 repeat-like 271 568 IPR036322 GO:0005515
Lja6g2570 1412 Gene3D - 1324 1410 IPR044938 -
Lja6g2570 1412 MobiDBLite consensus disorder prediction 847 870 - -
Lja6g2570 1412 MobiDBLite consensus disorder prediction 26 70 - -
Lja6g2570 1412 MobiDBLite consensus disorder prediction 120 134 - -
Lja6g2570 1412 MobiDBLite consensus disorder prediction 952 996 - -
Lja6g2570 1412 ProSiteProfiles Trp-Asp (WD) repeats profile. 297 339 IPR001680 GO:0005515
Lja6g2570 1412 MobiDBLite consensus disorder prediction 1 100 - -
Lja6g2570 1412 MobiDBLite consensus disorder prediction 900 932 - -
Lja6g2570 1412 MobiDBLite consensus disorder prediction 113 153 - -
Lja6g2570 1412 Gene3D - 254 598 IPR015943 GO:0005515
Lja6g2570 1412 MobiDBLite consensus disorder prediction 670 703 - -
Lja6g2570 1412 Pfam WD40 region of Ge1, enhancer of mRNA-decapping protein 249 562 IPR032401 -
Lja6g2570 1412 MobiDBLite consensus disorder prediction 853 869 - -
Lja6g2570 1412 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 297 334 - -
Lja6g2570 1412 MobiDBLite consensus disorder prediction 944 996 - -
Lja6g2570 1412 Coils Coil 1055 1075 - -
Lja6g2570 1412 MobiDBLite consensus disorder prediction 135 153 - -
Lja6g2570 1412 MobiDBLite consensus disorder prediction 720 753 - -
Lja6g2570 1412 MobiDBLite consensus disorder prediction 643 661 - -
Lja6g2570 1412 MobiDBLite consensus disorder prediction 1 19 - -
Lja6g2570 1412 PANTHER ENHANCER OF MRNA-DECAPPING PROTEIN 4 1 1412 IPR045152 GO:0031087
Lja6g2570 1412 SMART WD40_4 290 330 IPR001680 GO:0005515
Lja6g2570 1412 SMART WD40_4 409 449 IPR001680 GO:0005515
Lja6g2570 1412 MobiDBLite consensus disorder prediction 643 753 - -
Lja6g2570 1412 ProSiteProfiles Trp-Asp (WD) repeats profile. 416 458 IPR001680 GO:0005515
Lja6g2570 1412 MobiDBLite consensus disorder prediction 80 100 - -
Lja6g2570 1412 PANTHER ENHANCER OF MRNA-DECAPPING-LIKE PROTEIN 1 1412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2570 Lja-Chr6 54454974 54465447 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2570 - K12616 gmx:100777151 1966.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2570 6 54454974 54465447 Lja6g2570 6 54454974 54465447 ECH