Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2393 ATGAATCTCGTTTTTCACAGGCCTCAACTTTCTACATTCCCCACTGTTCACAATGTTGACCACAACAGGGGTCACAATTCTCTGCTGAAACCTCTCTACCTTTCAACCACCGAGAACTTGGTGGCACAACCCAGAAGAAGAAACGTGACAGAGTGTAGAGCCTATGAGGCAGACAGGTCAAGGCCACTGGAGATTAACATTGATTTGCCTGCACAAGAGGCGGCTCAGAAGCTGAAAATTGGGTTGTATTTTGCTACCTGGTGGGCTTTGAATGTGGTTTTCAACATTTACAACAAGAAGGTCTTGAATGCTTTTCCTTATCCGTGGCTCACTTCAACCTTGTCCCTTGCTGCTGGCTCTCTCATGATGTTGATTTCATGGGCCACTAGAGTTGCTGAGGCCCCAAAAGTTAATTTGGACTTCTGGAAGGCCCTGTTTCCGGTTGCGGTGGCACACACAATTGGGCATGTTGCAGCAACAGTGAGCATGTCCAAAGTTGCAGTTTCATTCACTCACATCATCAAGAGTGGAGAGCCTGCTTTCAGTGTCCTTGTATCAAGGTTCTTGCTTGGAGAAGCATTCCCTACTTCAGTTTACCTCTCACTGCTGCCAATTATTGGTGGTTGTGCACTGGCTGCTGTGACAGAGCTCAATTTCAATATGATCGGTTTCATGGGAGCTATGATATCAAATTTGGCATTTGTCTTCAGGAACATATTCTCAAAGAAAGGGATGAAGGGGATGTCTGTTAGTGGAATGAACTACTATGCGTGTCTTTCTATTATGTCTCTGTTAATTCTCACTCCTTTTGCCATTGCTGTGGAGGGTCCCAAGCTATGGGCTGCAGGCTGGCAAACTGCTGTGTCTCAGATTGGTCCCAATTTTGTATGGTGGGTGGTTGCTCAGAGTGTGTTCTACCACTTGTACAATCAAGTCTCATACATGTCCCTTGATCAGATTTCTCCCTTAACATTTAGCATAGGGAACACAATGAAGAGAATCTCTGTTATTGTCTCTTCCATCATTATCTTTCACACCCCAGTTCAGCCCATCAATGCTCTCGGAGCCGCCATAGCCATTCTTGGCACCTTCATCTATTCACAGGTTGATAACATAGGAGTCGAGAAAGGAAATGTCAGTAATAAAAGTGAGCTATGGCTAGCACACTTGTCTTTTGCTCCTGAAACAACAGTGACACACACGCACTCACTCAACATGGAGCTTCCACTGCATCATGCCATCTTTGCAATGAGCTTTTGCTTCTCAATTATCATCGGGTCGTGTGATATTGTATCTGTGAAAGAGAATTCAATTTCATCTCCATTTTCAGATAACTTCCTTTTTGGAACTGCATCTTCTTCATATCAGTTTGAAGGAGCTTACTTGACTGATGGCAAGGGACTAAATAACTGGGATGTGTTCACTCACAAGCCAGGCACTACAATGGATGGAACTAATGGGGATATTGCTGTTGATCATTACCATCGTTATGAGGAAGATGTGGACCTAATGGAATTCATTGGAGTCAACAGCTACCGTTTTTCATTATCATGGGCCAGAATTCTACCAAAAGGTAGATATGGCAAGGTGAACAAGGCAGGCATCGATTACTATAACCTGTTAATTGATGCACTTGTGAATAGAGGAATAGAACCCTTTGTCACTTTAACACACTATGACATTCCTCAGGAACTTGAGGACAGATATGAAAGTTGGCTAAGTCCTGAAATTCAGGAGGATTTCAGGTATTATGCAGATGTATGCTTCAAGTACTTTGGAGACAGAGTCAAATACTGGGTCACCTTTAATGAGCCCAATGTTGCCATCATTCGAGGTTATAGAACTGGGCTGCATCCACCGGCTCGTTGCTCTGGATTATTTGGCAACTGCAGCAAAGGGGACTCAGAGAGGGAGCCTTTCATTGCAGCTGCTAATCTTATTTCATCTCATGCAGCTGCTGTTGATGTGTACAGAACCAAATATCAGAAAAATCAGGGAGGAAAAATTGGAATTGTTCTGAATGCTATATGGTTTGAACCCTTCAGTAACTCCTCAGAAGACAAGTTAGCTGCTGAGAGAGCTCAATCATTTTACATGAATTGGTTTTTGGACCCAATTATACTAGGGAGGTATCCAGCTGAAATGGAAGAAATATTAGGACCTGATCTCCCACCATTTTCAAGATATGATGTGGAAAATAAACTCAAGAGGGGGTTAGATTTCATTGGAGTAAATCACTATACCAGCATGTTTGTAAAAGACTGCATCTTCTCAGCTTGTGAAGCAGGACTAGGGTCTTCAAGGACAGAAGGTTTTGCTTTCATATCAGGACAAATGGATGGCGTCAGCATCGGAGAACCGACTGTACTTGACTGGTTGCATGTTCACCCACAAGGAATGGAGAAGATAGTGACTTACATAAAGGATAGGTACAACAACATACCAATGTTCATTACAGAAAATGGACTTGGAACAAATGAGAATTCCTTCCCCACCACTGAAGATATATTCAATGATGCCGATAGAGTGGAATACTTGAGTGGTTACTTGGATTCTCTGGCAAGTGCAATAAGAAAAGGAGCAGATGTTAGAGGGTACTTTGTGTGGTCTCTGCTTGATAACTTTGAGTGGATTCAGGGATACACTATAAGGTTTGGACTTCATCATGTGGACTATACTACTCTTAGTAGAACCCGAAGACTCTCAGCATTTTGGTATAAAAACTTCATTGCTCAACATAAGGCTAGTGCGGGCATAAGGCCTGGGCCTGGGTATACTCAAGAGAGATGA 2790 0.4301 MNLVFHRPQLSTFPTVHNVDHNRGHNSLLKPLYLSTTENLVAQPRRRNVTECRAYEADRSRPLEINIDLPAQEAAQKLKIGLYFATWWALNVVFNIYNKKVLNAFPYPWLTSTLSLAAGSLMMLISWATRVAEAPKVNLDFWKALFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLLGEAFPTSVYLSLLPIIGGCALAAVTELNFNMIGFMGAMISNLAFVFRNIFSKKGMKGMSVSGMNYYACLSIMSLLILTPFAIAVEGPKLWAAGWQTAVSQIGPNFVWWVVAQSVFYHLYNQVSYMSLDQISPLTFSIGNTMKRISVIVSSIIIFHTPVQPINALGAAIAILGTFIYSQVDNIGVEKGNVSNKSELWLAHLSFAPETTVTHTHSLNMELPLHHAIFAMSFCFSIIIGSCDIVSVKENSISSPFSDNFLFGTASSSYQFEGAYLTDGKGLNNWDVFTHKPGTTMDGTNGDIAVDHYHRYEEDVDLMEFIGVNSYRFSLSWARILPKGRYGKVNKAGIDYYNLLIDALVNRGIEPFVTLTHYDIPQELEDRYESWLSPEIQEDFRYYADVCFKYFGDRVKYWVTFNEPNVAIIRGYRTGLHPPARCSGLFGNCSKGDSEREPFIAAANLISSHAAAVDVYRTKYQKNQGGKIGIVLNAIWFEPFSNSSEDKLAAERAQSFYMNWFLDPIILGRYPAEMEEILGPDLPPFSRYDVENKLKRGLDFIGVNHYTSMFVKDCIFSACEAGLGSSRTEGFAFISGQMDGVSIGEPTVLDWLHVHPQGMEKIVTYIKDRYNNIPMFITENGLGTNENSFPTTEDIFNDADRVEYLSGYLDSLASAIRKGADVRGYFVWSLLDNFEWIQGYTIRFGLHHVDYTTLSRTRRLSAFWYKNFIAQHKASAGIRPGPGYTQER* 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2393 929 SUPERFAMILY Multidrug resistance efflux transporter EmrE 121 214 - -
Lja6g2393 929 PANTHER GLYCOSYL HYDROLASE 421 914 IPR001360 GO:0004553|GO:0005975
Lja6g2393 929 SUPERFAMILY (Trans)glycosidases 439 910 IPR017853 -
Lja6g2393 929 Gene3D Glycosidases 423 921 - -
Lja6g2393 929 PRINTS Glycosyl hydrolase family 1 signature 839 850 IPR001360 GO:0004553|GO:0005975
Lja6g2393 929 PRINTS Glycosyl hydrolase family 1 signature 860 877 IPR001360 GO:0004553|GO:0005975
Lja6g2393 929 PRINTS Glycosyl hydrolase family 1 signature 816 824 IPR001360 GO:0004553|GO:0005975
Lja6g2393 929 PRINTS Glycosyl hydrolase family 1 signature 738 752 IPR001360 GO:0004553|GO:0005975
Lja6g2393 929 PRINTS Glycosyl hydrolase family 1 signature 884 896 IPR001360 GO:0004553|GO:0005975
Lja6g2393 929 PANTHER BETA-GLUCOSIDASE 45 421 914 - -
Lja6g2393 929 TIGRFAM tpt: Tpt phosphate/phosphoenolpyruvate translocator 78 372 IPR004696 GO:0016021|GO:0022857|GO:0055085
Lja6g2393 929 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 446 460 IPR033132 -
Lja6g2393 929 Pfam Glycosyl hydrolase family 1 440 914 IPR001360 GO:0004553|GO:0005975
Lja6g2393 929 Pfam Triose-phosphate Transporter family 78 367 IPR004853 -
Lja6g2393 929 ProSitePatterns Glycosyl hydrolases family 1 active site. 816 824 IPR018120 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2393 Lja-Chr6 52828876 52853561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2393 429 915 Glycoside Hydrolase AT4G21760 62.372 0.0 659
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2393 K05350 - gmx:100790658 1477.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2393 6 52828876 52853561 Lja6g2393 6 52828876 52853561 ECH