Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2320 ATGGCGGACAAGTACAACCTCAAGAACCCCGCCGTCAAGCGGATCCTCCAGGAGGTCAAGGAGATGCAGTCTAACCCTTCCGATGATTTCATGAGCCTCCCTCTCGAGGAGAATATATTTGAATGGCAATTTGCGATTAGAGGGCCGCGTGATACTGAATTTGAAGGTGGTATTTATCACGGACGGATCCAGTTGCCTTCAGAGTATCCATTCAAACCCCCTTCATTCACTCTCTTGACTCCTAATGGTCGTTTTGAGACCCAAACCAAGATTTGCTTGAGCATATCAAATCACCACCCTGAGCATTGGCAACCATCATGGAGCGTAAGGACTGCTCTAGTTGCACTGATTGCATTCATGCCTACCAACCCAAATGGTGCGTTGGGCTCATTAGACTACAAGAAAGAAGAGAGGCGTACCTTGGCCATCAAATCTCGTGATGCATCACCAAAATTCGGGACTCCCGAACGTCAAAAGCTGATTGATGAGATACATGAGTATATGCTAAGCAAGGCGCCTCCTGTTCCTCCTCAACTTAACCCCACACAAGCTCCTGAAGAGCACCCTAAAGATGAGGAAGCTGAGGTCCAGGTTAATTCACCTAACCCTGAGGCTTTACCTGCGGCCGAGGGGATTCCAGATCAAGCTGGTGATGGAATTGTAGAAGAACAAGACGCCCCTGCAACTGCAAATGCTAATACTGCAGGAGTTGAAGCTTCTAGCGAGATTCAATCAAGTAGTGTTTCAAGGACTCAGGTGCTCCAAAACTCAGAGACAAGGGTTCAAAATCCAAAGCCTCAGACGAGGGTCCAGAAACCTGATGATCGTTTGTTTACATGGGCAGCTATTGGACTTACTATAGCAATTGTGGTCCTCTTGTTGAAGAAGTTAATTAAATCCACTGAACATGGTGCAGTGTTCTTCGATGGATCTTAG 936 0.4701 MADKYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPRDTEFEGGIYHGRIQLPSEYPFKPPSFTLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRTLAIKSRDASPKFGTPERQKLIDEIHEYMLSKAPPVPPQLNPTQAPEEHPKDEEAEVQVNSPNPEALPAAEGIPDQAGDGIVEEQDAPATANANTAGVEASSEIQSSSVSRTQVLQNSETRVQNPKPQTRVQKPDDRLFTWAAIGLTIAIVVLLLKKLIKSTEHGAVFFDGS* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2320 311 Gene3D Ubiquitin Conjugating Enzyme 2 172 IPR016135 -
Lja6g2320 311 SUPERFAMILY UBC-like 11 133 IPR016135 -
Lja6g2320 311 Pfam Ubiquitin-conjugating enzyme 14 125 IPR000608 -
Lja6g2320 311 MobiDBLite consensus disorder prediction 227 270 - -
Lja6g2320 311 PANTHER BNAC01G21910D PROTEIN 6 311 - -
Lja6g2320 311 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 6 311 - -
Lja6g2320 311 MobiDBLite consensus disorder prediction 171 204 - -
Lja6g2320 311 SMART ubc_7 13 173 - -
Lja6g2320 311 Coils Coil 311 311 - -
Lja6g2320 311 MobiDBLite consensus disorder prediction 227 268 - -
Lja6g2320 311 CDD UBCc 12 127 IPR000608 -
Lja6g2320 311 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 10 165 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2320 Lja-Chr6 52108190 52111090 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2320 1 309 Miscellaneous Gene Families AT3G17000 64.630 1.21e-133 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2320 K10578 - gmx:100798396 517.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2320 6 52108190 52111090 Lja6g2320 6 52108190 52111090 ECH