Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2308 ATGGATAAGAAAATGGCTTTGCAGAAGTATGTTCCTTCTGGTGATGCACCTACTGTTAACATGAAACGTTTGAGTTTTTCCACTAAGGGGGCTGAGAAAACTCAGCTTAATGTGGCAAACCAGAATCATAACATGAATGTGGATGTTGACCTTAGGGAAGTTTATTTTCTCATTCTGCACTTCCTTTCTGCTGGGCCATGTCATAAAACTTGTTTACAATTTTGGAATGAGCTTCTTGAGCATGAACTTTTGCCTAGAAGGTATCATTCTTGGTATTCAAGGAGTGGGGCATGTAGTGGAAATGCAGATGATGATGGTTTATCATTCCCTTTAAGTTATGATAAGTTGGTGGAGAGGTATCCTCACATTGAAAAGGACCACTTAGTAAAGCTTTTGAAACAGTTATTAAATACAGCCTCTCCATCGCTGGGCATGAGCACCAGAAATGCTCCAAATGCAGCCGATGTACCTACTCTTCTTGGAAGGGGCTCATTTTCACTTCTGAGCTATGACAGGGATAAAATGAATGAAGAAGCCAAACGACCGGCTGCTTATATGCGCTGGCCTCATATGAAAGCCAATCAGGTTCATGGGCTCAATTTGAGGGAAATTGGGGGTGGTTTCCCCAGACACCACCGTGCACCTTCTATACGTGCTGCATGCTATGCCATAGCAAAACCTTCTACCATGGTACAGAAGATGCAAAATATCAAGAGGACAAGAGGACACCGCAATGCTGTGTATTGTGCTATATTAGATCGATCAGGAAGATATGTAATTACTGGTTCAGATGATCGACTTGTAAAAATTTGGTCAATGGAAACTGCATATTGTTTGGCCAGTTGCCGTGGACACGACGGTGACATCACAGACTTGGCTGTGAGTTCCAACAATGCTTTGGTTGCATCCTCATCAAATGACTGTGTCATTCGAGTTTGGCGGTTGCCAGATGGATTGCCAATATCAATTTTACGGGGACATACTGGAGCTGTTACAGCCATAGCATTTAGTCCCAGACCTAATGCTGTTTACCAGCTTTTATCTTCATCTGATGACGGCACTTGTAGGATATGGGATGCAAGGCACACTCAATCAGTTCCAAGATTATATGTTCCAAGGCCTCCTGATTCTCTTGGGAAGAGCAGTGGCCCATCTTCAAGTACTTTTCCGCAGAGCCATCAGATTTTTTGCTGTGCATTTAATGCTAATGGAACTGTCTTTGTCACTGGTAGTTCTGACAATCTTGCTCGGGTCTGGAATGCTTGTAAATTTAGTGTGGATGATGCTGACCAACCAAATCACGAGTTAGATATGCTATCAGGGCATGAAAATGATGTGAATTATGTGCAATTCAGTGGATGTGCAGTAGCATCTAGATTTTCCGCAGCAGAAACTTTGAAGGAGGAAAATATACCCAAATTTAAGAATTCATGGTTGAATCACGACAACATAGTTACCTGCTCTCGTGATGGGAGTGCTATTATATGGATTCCAAAATCACGCAGGTCACATGGAAAAAGTGGTCGCTGGACTCGGGCATATCATTTGAGAGTTCCACCTCCACCTATGCCTCCTCAACCTCAGAGAGGTGGTCCTCGTCAGAGAATTCTACCAACTCCACGTGGTGTAAATATGATTGTTTGGAGCCTAGACAACCGCTTCGTCCTTGCAGCTATTATGGATTGCAGAATTTGTGTTTGGAATGCTTCTGATGGCAGCTTAGTACACTCGTTGACTGGACATACCGAGTCTACATATGTTCTGGATGTTCATCCTTTTAATCCGCGGATCGCTATGAGTGCTGGATATGATGGAAGAACTATTGTGTGGGATATATGGGAAGGCAAGCCTATCCGAATATATGAGATATCGCATTTCAAGTTAGTGGATGGGAAGTTTTCTCCGGATGGGACATCAATTATACTTTCAGATGATGTTGGTCAACTTTATATATTAAGCACAGGTCAAGGTGAGTCCCAGAAAGATGCCAAATATGATCAGTTCTTTCTTGGTGATTATCGACCTCTCATTCAAGATACCCATGGTAATGTACTTGACCAGGAAACTCAAATTGTTCCATATCGACGGAATCTGCAAGATTTGCTCTGTGATTCAGCACTGATACCATACCCAGAACCTTATCAGACTGAATTTCAGCAAAGACGATTGGGAGCTTTAGGTCTCGAGTGGCGCCCGTCATCACTAAGGCTTGCTGTTGGTCCTGACTTCAGTTTGGATCCCGATTTTCATATGCTTCCATTGGCAGACTTGGATGTGCTTACAGAACCATTACCAGAGTTTATAGATGCTATGGATTGGGAGCCTGAAATTGAAGTCTTTAGTGATGATGCTGATTCAGAATATAATTTCACTGAAGATTGCTCTTCTCGGGGTGAGAAAGGATGTTCAAGCTCCAGTGACTCTGGTGATCCAGAGTGCAGCACAGATAACAGTGAAGAGGAGGACATTCACATGGATAGCATTCGTAGATCGAAGAGAAAAAAACAGAAGAATGAAACTGAGATTATGACTTCTTCTGGGAGACGTGTGAAAAGGAGGAATTTGGATGAGTGTGATGGCAATACTTTCAGCAGTAACCGAAATAGGAAGGGAAAAAGTGTCCAGAAAACTTCAAGGAGGAAATCTTCTAAGTCAAAATCTTCCAGACCTCAAAGAGCCGCGGCACGCAATGCTCTGCATTTATTTTCCAAAATTACGGGTGCACCAACAGATGGAGAAGAAGATAGTTTGCTTGGTGATTTTTCAGATAGTGAGTCAACGTTGCAAGAGTCTAATATTGACAGTGATGAATCTGGTAGAGCTTCACAGAATGACCAACTGAATTGTTCCAAGGGAAAAGAAGTATTATTGTCTGAATCACAGGACACAAAATCTCATGAGTTAACTGAGACTCATGTGAATGCAGTGAACCGGAGGAGATTGGTTCTCAAGTTTCCAATTCGTGATTCATCTCAACCCATGCATGAGTTTGACAAGCAGGATGGATTGGTTGGTTCATCATCAAAAACTGCTGATTTAAGTAGGAACAGACCAAGTTCTCAGGATCCTGAGTATTATTTTGGCAATGGAAGCAATGAAACAATTGAAAGAAATCATCAACTAAACCTAGGCCAGGAAGCAGACGACGTGGACTTACTAGGAAAAATTAGATGGGGAGTGGTTAGGCCTCGTTCATCTAAACTTCTTAGAGTGAGAGAAGCTGTGCCATCAGAGGCAAATGCCAACTCTGTAAAATGTCCTAATCAACTCGATGAAAAAGAAAATGGTGGTACTGGGCTCGAGAAGGAGAACAAGGACTTTAGTACATCAACCCTTGCTTTAGAAATTCAGAATGATGATGATAAGGTAGATAACTTGACCGATAACAGCGGAAATTGTGTCAGCACTTCTTCACAGCTTTTTAATCCTGCTGAGAATGGAGAAGTGCTCACTGCTTCCAGCAATTGCAGGGATAAAGATGAATCACTAGTTAATGCAAGCATGATTCCTCAGGATACTATTCCTGCTTTCGTCACCCATGAGGCTGACCAACTACCTGAACCAAATATTGGTTTTCCTTCTGTTTCAACAAAGCTAAGGTCTAAAAGGGGTTCACGGGATGGTGAAAGTCCATCCAAGCATGAGACAAAATCTTCAGTGCTAAAGAATAGTGCATGTAGCACTAATGCTGATAATAATTTGAACAACGAACACCATATCGTTGTGGTTGAGGATGGCAACAATAATAGAGTAACATCTAATCAGGGAGAAAATGGTTCTCCAGAAGATGCTCAGGTTAAACAAATTAGTACTTCCCATGATTCACTAGAGCCACGTCCAAATAGAGATAAAATGTATAAAGCTGTTTATAGAAGATCAAGATCACATAAGGCTGTGAATAATTTAGCTGATGGAAGTGTCTTGGGAGAATCCACTTCAAATGGTAGCAACAGTAATTCCAATGTGGCTGTGGGCTTAAGTAATGGCACAAATGAAGCTCTGCATACCAGTGGTTCCTTAGAGTTGGAAACAGCTACTTGTGACGCAAATAATGAGCGGAATAATTTCAAAGTGCAGCAAGGACATGAATCTTGTATGGTTAGAAGCCCACAGAATGCTTCTACAAGCAGAGGACAACTCACAGAAGAAGAAAGGGGACGTAGTTCAAAATTGACTGTTGGTTTGAGGTCCACCAGGAGTCGGAGGTCTAGTTATAATATTCGGGAGACTAGTCCTGTAAATATTAAAAAACCGACACAATCAGCTTCCAAAGGGTCATGGTTGCTGTTATCGACGCATGAGGAAGGATGCAGATATATTCCACAACAGGGAGATGAAGTTGTATATTTGAGACAGGGACACCAGGAGTATATAGATTATCTCCGTAAAAGAGAATCGGGGCCTTGGATATTGCTCAAGGGACATATAAGAGCTGTAGAATATTGTAGAGTTCAAAGCCTTGAGTATTCTCATGTTCCAGGGTCTGGTGATAGCTGCTGCAAAATGACCCTTCAGTTTGTAGATCCTGATTCAAGTGTTGTTGGCAAATCTTTTAAATTAACCCTACCTGAAGTGACCGGTTTCCCAGATTTTCTTGTTGAGAGAACTAGGTTTGATGCTGCCATGCAAAGAAACTGGACCCGGAGGGATAAATGCAGGGTTTGGTGGAAGAATGAGGACAATTCCTCCGGTAGTTGGTGGGATGGTCGAATTCTGTGGGACAAAGCCAAGTCTCCTGAATTTCCAGACAGTCCATGGGAGAGGTATAATGTTCGGTACAAGAGTGACCTCTCTGAAACACATTTGCACAGTCCTTGGGAGCTTTTTGATGCTGATACTCAATGGGAACAGCCTCACATTGATGATAACAGTCGAAATAAACTGCTATCTTCTCTGACCAAATTACAGCAGTCAGGCAACACTGCGCAGGATCGTTATGGGTTGCGTGAATTGAAGAAAATTTCAACCAAGTCAAAATTTATAAACAGGTTTCCTGTTCCTCTGTCTCTTGAATTGATACTGTCAAGGTTGGAAAACAATTACTACCGTAGTTTGGAGGCAATGAAGCACGATGTCTCCGTTCTAGTGTCAAATGCGACCTCTTTTCTTGAAAAGGACGCAGACATGTCCGCGAAAATCAAACGCCTATCAGAATGGTTCACCCGGACCTTATCATCTTCATAG 5184 0.4223 MDKKMALQKYVPSGDAPTVNMKRLSFSTKGAEKTQLNVANQNHNMNVDVDLREVYFLILHFLSAGPCHKTCLQFWNELLEHELLPRRYHSWYSRSGACSGNADDDGLSFPLSYDKLVERYPHIEKDHLVKLLKQLLNTASPSLGMSTRNAPNAADVPTLLGRGSFSLLSYDRDKMNEEAKRPAAYMRWPHMKANQVHGLNLREIGGGFPRHHRAPSIRAACYAIAKPSTMVQKMQNIKRTRGHRNAVYCAILDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHDGDITDLAVSSNNALVASSSNDCVIRVWRLPDGLPISILRGHTGAVTAIAFSPRPNAVYQLLSSSDDGTCRIWDARHTQSVPRLYVPRPPDSLGKSSGPSSSTFPQSHQIFCCAFNANGTVFVTGSSDNLARVWNACKFSVDDADQPNHELDMLSGHENDVNYVQFSGCAVASRFSAAETLKEENIPKFKNSWLNHDNIVTCSRDGSAIIWIPKSRRSHGKSGRWTRAYHLRVPPPPMPPQPQRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNASDGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGKPIRIYEISHFKLVDGKFSPDGTSIILSDDVGQLYILSTGQGESQKDAKYDQFFLGDYRPLIQDTHGNVLDQETQIVPYRRNLQDLLCDSALIPYPEPYQTEFQQRRLGALGLEWRPSSLRLAVGPDFSLDPDFHMLPLADLDVLTEPLPEFIDAMDWEPEIEVFSDDADSEYNFTEDCSSRGEKGCSSSSDSGDPECSTDNSEEEDIHMDSIRRSKRKKQKNETEIMTSSGRRVKRRNLDECDGNTFSSNRNRKGKSVQKTSRRKSSKSKSSRPQRAAARNALHLFSKITGAPTDGEEDSLLGDFSDSESTLQESNIDSDESGRASQNDQLNCSKGKEVLLSESQDTKSHELTETHVNAVNRRRLVLKFPIRDSSQPMHEFDKQDGLVGSSSKTADLSRNRPSSQDPEYYFGNGSNETIERNHQLNLGQEADDVDLLGKIRWGVVRPRSSKLLRVREAVPSEANANSVKCPNQLDEKENGGTGLEKENKDFSTSTLALEIQNDDDKVDNLTDNSGNCVSTSSQLFNPAENGEVLTASSNCRDKDESLVNASMIPQDTIPAFVTHEADQLPEPNIGFPSVSTKLRSKRGSRDGESPSKHETKSSVLKNSACSTNADNNLNNEHHIVVVEDGNNNRVTSNQGENGSPEDAQVKQISTSHDSLEPRPNRDKMYKAVYRRSRSHKAVNNLADGSVLGESTSNGSNSNSNVAVGLSNGTNEALHTSGSLELETATCDANNERNNFKVQQGHESCMVRSPQNASTSRGQLTEEERGRSSKLTVGLRSTRSRRSSYNIRETSPVNIKKPTQSASKGSWLLLSTHEEGCRYIPQQGDEVVYLRQGHQEYIDYLRKRESGPWILLKGHIRAVEYCRVQSLEYSHVPGSGDSCCKMTLQFVDPDSSVVGKSFKLTLPEVTGFPDFLVERTRFDAAMQRNWTRRDKCRVWWKNEDNSSGSWWDGRILWDKAKSPEFPDSPWERYNVRYKSDLSETHLHSPWELFDADTQWEQPHIDDNSRNKLLSSLTKLQQSGNTAQDRYGLRELKKISTKSKFINRFPVPLSLELILSRLENNYYRSLEAMKHDVSVLVSNATSFLEKDADMSAKIKRLSEWFTRTLSSS* 1728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2308 1727 SUPERFAMILY WD40 repeat-like 232 654 IPR036322 GO:0005515
Lja6g2308 1727 MobiDBLite consensus disorder prediction 1078 1107 - -
Lja6g2308 1727 CDD WD40 241 611 - -
Lja6g2308 1727 Gene3D - 211 383 IPR015943 GO:0005515
Lja6g2308 1727 MobiDBLite consensus disorder prediction 921 949 - -
Lja6g2308 1727 ProSiteProfiles Trp-Asp (WD) repeats profile. 388 420 IPR001680 GO:0005515
Lja6g2308 1727 ProSiteProfiles Trp-Asp (WD) repeats profile. 324 368 IPR001680 GO:0005515
Lja6g2308 1727 ProSiteProfiles Trp-Asp (WD) repeats profile. 240 281 IPR001680 GO:0005515
Lja6g2308 1727 PANTHER PH-INTERACTING PROTEIN-LIKE ISOFORM X1 20 1725 - -
Lja6g2308 1727 Gene3D - 1648 1727 IPR036427 GO:0005515
Lja6g2308 1727 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 240 275 - -
Lja6g2308 1727 MobiDBLite consensus disorder prediction 1246 1275 - -
Lja6g2308 1727 Pfam Bromodomain 1665 1713 IPR001487 GO:0005515
Lja6g2308 1727 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 282 315 - -
Lja6g2308 1727 MobiDBLite consensus disorder prediction 1217 1236 - -
Lja6g2308 1727 Pfam WD domain, G-beta repeat 320 359 IPR001680 GO:0005515
Lja6g2308 1727 Pfam WD domain, G-beta repeat 572 611 IPR001680 GO:0005515
Lja6g2308 1727 Pfam WD domain, G-beta repeat 278 313 IPR001680 GO:0005515
Lja6g2308 1727 Pfam WD domain, G-beta repeat 235 272 IPR001680 GO:0005515
Lja6g2308 1727 Pfam WD domain, G-beta repeat 392 420 IPR001680 GO:0005515
Lja6g2308 1727 CDD Bromo_WDR9_I_like 1599 1727 - -
Lja6g2308 1727 SMART WD40_4 317 359 IPR001680 GO:0005515
Lja6g2308 1727 SMART WD40_4 382 420 IPR001680 GO:0005515
Lja6g2308 1727 SMART WD40_4 571 611 IPR001680 GO:0005515
Lja6g2308 1727 SMART WD40_4 432 497 IPR001680 GO:0005515
Lja6g2308 1727 SMART WD40_4 233 272 IPR001680 GO:0005515
Lja6g2308 1727 SMART WD40_4 530 568 IPR001680 GO:0005515
Lja6g2308 1727 SMART WD40_4 275 314 IPR001680 GO:0005515
Lja6g2308 1727 MobiDBLite consensus disorder prediction 872 887 - -
Lja6g2308 1727 MobiDBLite consensus disorder prediction 1200 1216 - -
Lja6g2308 1727 MobiDBLite consensus disorder prediction 1391 1405 - -
Lja6g2308 1727 ProSitePatterns Trp-Asp (WD) repeats signature. 598 612 IPR019775 -
Lja6g2308 1727 MobiDBLite consensus disorder prediction 1362 1405 - -
Lja6g2308 1727 MobiDBLite consensus disorder prediction 1305 1330 - -
Lja6g2308 1727 MobiDBLite consensus disorder prediction 1184 1280 - -
Lja6g2308 1727 MobiDBLite consensus disorder prediction 796 812 - -
Lja6g2308 1727 Gene3D - 388 523 IPR015943 GO:0005515
Lja6g2308 1727 SUPERFAMILY Bromodomain 1664 1724 IPR036427 GO:0005515
Lja6g2308 1727 MobiDBLite consensus disorder prediction 1003 1025 - -
Lja6g2308 1727 MobiDBLite consensus disorder prediction 818 858 - -
Lja6g2308 1727 PANTHER WD REPEAT DOMAIN 9 20 1725 - -
Lja6g2308 1727 MobiDBLite consensus disorder prediction 1362 1379 - -
Lja6g2308 1727 MobiDBLite consensus disorder prediction 790 949 - -
Lja6g2308 1727 ProSiteProfiles Trp-Asp (WD) repeats profile. 282 323 IPR001680 GO:0005515
Lja6g2308 1727 Gene3D - 533 667 IPR015943 GO:0005515
Lja6g2308 1727 ProSiteProfiles Trp-Asp (WD) repeats profile. 578 620 IPR001680 GO:0005515
Lja6g2308 1727 MobiDBLite consensus disorder prediction 992 1025 - -
Lja6g2308 1727 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 324 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2308 Lja-Chr6 52005767 52022332 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2308 542 656 Miscellaneous Gene Families AT5G08390 27.119 5.77e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2308 K11797 - gmx:100818665 2773.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2308 6 52005767 52022332 Lja6g2308 6 52005767 52022332 ECH