Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2300 ATGAAGATGAATCCCAAATGGGTTTTTCTTTTGAGTTTTGCAGCAATGTTAGTAATTGGGAATGGTCAATCAAAAGTGGAGCCACTGGTAAAGAAAGTGAAGGGGAAGAAGCTATGTGACAAAGGGTGGGAATGTAAAGGATGGTCAGTTTATTGCTGCAATGAGACTATTACTGATTTCTTTGAGACCTACCAGTTTGAGAACCTCTTCTCAAAAAGGAATGCACCAGTGGCACATGCTGTTGGGTTCTGGGACTACAAATCTTTCATCTCTGCTGCAGCACTTTACCAGCCTCTAGGATTTGGAACCTCTGGAGGAAAGCACGGTGGACAAAAGGAGCTTGCAGCTTTCCTTGGTCATGTGGGTAGCAAGACCTCTTGTGGTTATGGGGTAGCTACTGGAGGACCCTTTGCCTGGGGCTTATGCTACAATAAGGAATTGAGTCCTGATCAATTCTACTGTGATGACTATTACAAGTTAACCTATCCATGCTCCCCTGGCGCAGCATATTATGGTCGTGGTGCCATACCAATTTACTGGAACTACAACTATGGAAAGACTGGGGAGGCCTTGAAGGTGGATCTATTGAACCATCCAGAATACATAGAACAGAATGCTACCCTGGCCTTCCAAGCTGCAATCTGGAAGTGGATGACCCCACCAGAGAAGCACCTTCCTTCAGCACATGATGTATTTGTTGGAAACTGGAAACCCACCAAGAATGACACACTGTCCAAGAGGGTTCCTGGGTTTGGTGCCACCATCAATGTGCTGTATGGGGATCAATTGTGTGGTCAGGGATCTGATAATGAGGGCATGAACAACATCATCTCACACTATCTCTACTACCTTGATCTCATGGGTGTTGGCAGAGAAGAGGCAGGGCCTAATGAAGTGCTCTCTTGTGCTGAGCAAGAGGCTTTTAAGCCCTCTGGATCACCATTTTCTTCAACAACTTGA 960 0.4573 MKMNPKWVFLLSFAAMLVIGNGQSKVEPLVKKVKGKKLCDKGWECKGWSVYCCNETITDFFETYQFENLFSKRNAPVAHAVGFWDYKSFISAAALYQPLGFGTSGGKHGGQKELAAFLGHVGSKTSCGYGVATGGPFAWGLCYNKELSPDQFYCDDYYKLTYPCSPGAAYYGRGAIPIYWNYNYGKTGEALKVDLLNHPEYIEQNATLAFQAAIWKWMTPPEKHLPSAHDVFVGNWKPTKNDTLSKRVPGFGATINVLYGDQLCGQGSDNEGMNNIISHYLYYLDLMGVGREEAGPNEVLSCAEQEAFKPSGSPFSSTT* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2300 319 SUPERFAMILY Lysozyme-like 57 308 IPR023346 -
Lja6g2300 319 PIRSF Endochitinase 1 309 IPR016283 GO:0004568|GO:0005975
Lja6g2300 319 PANTHER CHITINASE-LIKE PROTEIN 1 12 312 - -
Lja6g2300 319 Gene3D - 65 308 - -
Lja6g2300 319 Pfam Chitinase class I 65 292 IPR000726 GO:0004568|GO:0006032|GO:0016998
Lja6g2300 319 Gene3D Endochitinase, domain 2 145 204 - -
Lja6g2300 319 CDD chitinase_GH19 65 302 - -
Lja6g2300 319 PANTHER CHITINASE-RELATED 12 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2300 Lja-Chr6 51945522 51947803 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2300 24 308 Glycoside Hydrolase AT3G16920 83.158 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2300 - - gmx:100809617 597.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2300 6 51945522 51947803 Lja6g2300 6 51945522 51947803 ECH