Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2297 ATGTCTAGTGATTGTTGCAATGGCAAAAAGTGCTTATGGGCTTTTGGGCTAGTGACATGTTTGGTTGCCATGTTAATAGGGGCAGGGGAAGCAAGGGTGCCATTTGCGTGTGACCCCCAAAAAGGGTTAACAAGGGGGTTCAAGTTTTGCAGAACAAACGTGCCAATCCATGTTAGGGTGCAGGACCTCATAGGGAGGCTCACATTGGCGGAGAAGATAAGACTGGTGGTGAACAATGCCATTGAGGTGCCACGGCTCGGAATTCAAGGCTATGAGTGGTGGTCGGAGGCGTTGCACGGCGTTTCTAATGTGGGGCCAGGGACTAAGTTCGGTGGGGCCTTCCCCGCCGCCACCAGCTTCCCTCAGGTTATCACCACCGCTGCTTCATTCAATCAGTCGCTGTGGAAAGAAATTGGACGGGTGGTGTCTGATGAGGCAAGAGCTATGTACAATGGTGGAGCAGCAGGATTGACGTATTGGAGCCCGAATGTGAACATTTTCCGTGACCCCCGGTGGGGCCGTGGCCAGGAAACTCCCGGTGAGGACCCAACCTTAGCTGCGAAATACGCCGCTAGCTATGTCCAGGGACTCCAAGGTGATGGTGCCGGTAACCGCCTCAAGGTTGCTGCTTGTTGCAAGCACTACACTGCCTATGACCTTGATAACTGGAATGGTGTGGACAGGTTTCATTTCAATGCCAGGGTTAGCAAGCAGGACTTGGAGGACACATATAATGTACCATTCAAAGCCTGTGTGATGGAAGGCAAAGTAGCAAGTGTGATGTGCTCTTACAATCAGGTGAATGGAAAGCCTACATGTGCTGATTCTGATCTTCTTCGCAACACAATCCGTGGCCAGTGGCGTCTTAATGGGTACATAGTCTCAGACTGTGACTCTGTTGGAGTATTCTATGACAACCAACACTACACCAGAACACCTGAAGAAGCAGCTGCAGAAGCAATTAAAGCTGGGCTGGATCTTGATTGCGGCCCATTCTTGGCCCTCCACACTGATGCAGCCATTAAGAATGGGCTCATTACAGAAAATGATCTTAACCTTGCCTTGGCCAACCTTATTACTGTCCAGATGAGATTGGGCATGTTCGACGGCGAGCCATCGGCCCATCCATACGGGAACTTGGGCCCGAGAGATGTCTGCACCCCGGCCCATAACGAACTTGCCCTTGAAGCAGCTAGGCAGGGCATAGTTCTGCTAGAAAACAAAGGAAATGCCCTGCCATTATCCCCTACTCGACACCGCACTGTAGGAGTCATTGGACCTAATTCAGATGTTACTGTTACAATGATAGGAAACTATGCTGGTGTGGCATGTGGTTATACTACACCATTGCAAGGGATTGCTAGATATGTGAAGACCATTCATCAAGCAGGATGCAGGGACGTCAGTTGCCGCGGAACCGAACTATTTGGAAACGCAGAAATTGTGGCTAGGCAGTCTGATGCCACAGTGGTAGTGGTGGGCCTTGACCAGTCCATAGAAGCTGAGTTCAGAGACAGGGTTGGGCTTCTATTACCAGGCCACCAACAAGAGCTCGTGTCTAGAGTGGCCCGGGCCGCAAGAGGCCCGGTTGTGCTGGTCATCATGTCTGGTGGGCCTGTTGATGTCCAATTTGCTAAAGATGATCCTAAGATCAGTGCCATTTTGTGGGTTGGTTACCCTGGCCAAGCTGGAGGAACTGCCATTGCAGATGTGATTTTTGGTAGAACAAACCCTGGAGGAAGGCTACCCAACACATGGTACCCTCAGTCCTATGTGGCTAAACTACCCATGACAAACATGGACATGCGACCAAACCCAGCATCAGGGTACCCAGGAAGGACCTACAGATTCTACAAGGGCCCAGTGGTGTTCCCATTTGGGCATGGACTGAGCTACAGTAGGTTCACACATACCTTAGCAGTTGCCCCAGAACAGGTTTCAGTCCCCATTGCAAGCCTCCAAGCCTTTAGAAACTCAACCATGTCAAGCAAAGCAGTGAAAGTGAGTCATGCCAAGTGTGGTGCCTTGAAAATGGGATTCCATGTTGATGTGAAAAATGAAGGCTCCATGGATGGAACTCACACCCTTCTGATTTTCTCAACTCCACCACCTGGAAAATGGTCTGCAAGTAAACAATTGGTGAGCTTCCACAAGACATATGTTCCTGCTGGCTCAAAGCAAAGGGTCAATGTTGGTGTTCATGTGTGCAAGCATCTTTCAGTTGTGGATGAGAATGGGATTCGAAGAATCCCAATGGGTGATCATGAACTCCATATTGGTGATGTCAAACACACAATTTCAGTCCAAACTCTGGAAGAACAAGATATCAAACATTAA 2337 0.4968 MSSDCCNGKKCLWAFGLVTCLVAMLIGAGEARVPFACDPQKGLTRGFKFCRTNVPIHVRVQDLIGRLTLAEKIRLVVNNAIEVPRLGIQGYEWWSEALHGVSNVGPGTKFGGAFPAATSFPQVITTAASFNQSLWKEIGRVVSDEARAMYNGGAAGLTYWSPNVNIFRDPRWGRGQETPGEDPTLAAKYAASYVQGLQGDGAGNRLKVAACCKHYTAYDLDNWNGVDRFHFNARVSKQDLEDTYNVPFKACVMEGKVASVMCSYNQVNGKPTCADSDLLRNTIRGQWRLNGYIVSDCDSVGVFYDNQHYTRTPEEAAAEAIKAGLDLDCGPFLALHTDAAIKNGLITENDLNLALANLITVQMRLGMFDGEPSAHPYGNLGPRDVCTPAHNELALEAARQGIVLLENKGNALPLSPTRHRTVGVIGPNSDVTVTMIGNYAGVACGYTTPLQGIARYVKTIHQAGCRDVSCRGTELFGNAEIVARQSDATVVVVGLDQSIEAEFRDRVGLLLPGHQQELVSRVARAARGPVVLVIMSGGPVDVQFAKDDPKISAILWVGYPGQAGGTAIADVIFGRTNPGGRLPNTWYPQSYVAKLPMTNMDMRPNPASGYPGRTYRFYKGPVVFPFGHGLSYSRFTHTLAVAPEQVSVPIASLQAFRNSTMSSKAVKVSHAKCGALKMGFHVDVKNEGSMDGTHTLLIFSTPPPGKWSASKQLVSFHKTYVPAGSKQRVNVGVHVCKHLSVVDENGIRRIPMGDHELHIGDVKHTISVQTLEEQDIKH* 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2297 778 Pfam Fibronectin type III-like domain 698 761 IPR026891 -
Lja6g2297 778 Gene3D Immunoglobulins 655 778 IPR013783 -
Lja6g2297 778 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 402 635 IPR036881 GO:0004553|GO:0005975
Lja6g2297 778 Gene3D - 388 633 IPR036881 GO:0004553|GO:0005975
Lja6g2297 778 Gene3D - 59 375 IPR036962 GO:0004553|GO:0005975
Lja6g2297 778 PANTHER BETA-D-XYLOSIDASE 1 18 771 - -
Lja6g2297 778 PRINTS Glycosyl hydrolase family 3 signature 282 300 IPR001764 GO:0004553|GO:0005975
Lja6g2297 778 PRINTS Glycosyl hydrolase family 3 signature 120 139 IPR001764 GO:0004553|GO:0005975
Lja6g2297 778 PRINTS Glycosyl hydrolase family 3 signature 208 224 IPR001764 GO:0004553|GO:0005975
Lja6g2297 778 Pfam Glycosyl hydrolase family 3 N terminal domain 114 359 IPR001764 GO:0004553|GO:0005975
Lja6g2297 778 PANTHER SUGAR HYDROLASE-RELATED 18 771 IPR044993 GO:0009044|GO:0045493
Lja6g2297 778 SMART Fn3_like_2 694 763 IPR026891 -
Lja6g2297 778 SUPERFAMILY (Trans)glycosidases 48 401 IPR017853 -
Lja6g2297 778 Pfam Glycosyl hydrolase family 3 C-terminal domain 402 632 IPR002772 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2297 Lja-Chr6 51904681 51910852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2297 6 769 Glycoside Hydrolase AT5G49360 72.258 0.0 1140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2297 - - lja:Lj6g3v1538130.1 1426.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2297 6 51904681 51910852 Lja6g2297 6 51904681 51910852 ECH