Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2282 ATGGCTGTTCTTACTTTCACCGACGAGACCACCTCTACCGTAGCTCCAGCTAAGCTTTTCAAAGCTTTGGTTCTAGATGTTGATACCATCGTCCCAAAGGTTATTCCTGTTTTCAAGAGTGTTGAAATTGTTGAAGGAAATGGAATTGCCGTCGGAACCGTAAAAAAAATCACTATCAATGAAGGTGGAGAAGACAAGTATGTGTTGCACAAAATCGATGCAATTGATGAGGCCAATTTTGTATACAACTACAGCGTCATTGGAGGTGATGGGTTACCAGACGCCGCGGAGAAGATTTCATTTGAGTCCAAATTGATTGCAGGGTCTGATGGAGGTTCCATTGCAAAGCTCACCATCCACTTCCACCTCAAAGGTGATGCTAAACCCACTGAAGCAGAGCTCAAGGAAGGCAAGGAAAAGGGTGATGGTCTTTTCAAGGCAGTTGAGGGTTACGTCTTGGCCAATCCCGATTACTAA 477 0.4444 MAVLTFTDETTSTVAPAKLFKALVLDVDTIVPKVIPVFKSVEIVEGNGIAVGTVKKITINEGGEDKYVLHKIDAIDEANFVYNYSVIGGDGLPDAAEKISFESKLIAGSDGGSIAKLTIHFHLKGDAKPTEAELKEGKEKGDGLFKAVEGYVLANPDY* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2282 158 CDD Bet_v1-like 5 152 - -
Lja6g2282 158 Pfam Pathogenesis-related protein Bet v 1 family 1 155 IPR000916 GO:0006952
Lja6g2282 158 PANTHER - 1 158 - -
Lja6g2282 158 Gene3D - 2 158 IPR023393 -
Lja6g2282 158 PANTHER ABA-RESPONSIVE PROTEIN 1 158 - -
Lja6g2282 158 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lja6g2282 158 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lja6g2282 158 PRINTS Major pollen allergen Bet V1 signature 50 59 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lja6g2282 158 PRINTS Major pollen allergen Bet V1 signature 66 85 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lja6g2282 158 PRINTS Major pollen allergen Bet V1 signature 85 98 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lja6g2282 158 PRINTS Major pollen allergen Bet V1 signature 110 126 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lja6g2282 158 PRINTS Major pollen allergen Bet V1 signature 144 154 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lja6g2282 158 ProSitePatterns Pathogenesis-related proteins Bet v I family signature. 89 121 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lja6g2282 158 SUPERFAMILY Bet v1-like 4 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2282 Lja-Chr6 51781936 51782969 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2282 - - lja:Lj0g3v0216469.1 238.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2282 6 51781936 51782969 Lja6g2282 6 51781936 51782969 ECH