Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2280 ATGCTTTACATTTTCCAGGATGAGACCACCTCCACTGTAGCCCCAGCTAGGCTTTACAAAGCTCTCACCATTGATGGTGATACCATCATCCCAAAGGTTATTCCAGGCTTCAGAACTGTTGAAATTGTTGAAGGAAATGGAGGCCCTGGAACCATCAAGAAGCTCACTTTCGAGGAAGATGGGCAAACCAAGGAATTGTTGCACAAAATTGATTCAATTGATCAGGCCAATTTGAAATACAACTACAGCATAGTTGGAGGTACTGATCTTCCAGCCACAGTGGAGAAAATCTCATTTGAGGCCCATTTGGTTGTGGGTTCAAATGGAGGATCAATTGCAAAACACAATATCAACTACCACACCAAAGGCAATGCTAGTTTCTCTGAAGAGGAGGTCATGGCTGGCAAGGCCAAGGGTGATGCTCTTTTCAAGGCCATTGAGGGTTATGTTTTGGCCAATCCTGATTACAACTAA 474 0.4388 MLYIFQDETTSTVAPARLYKALTIDGDTIIPKVIPGFRTVEIVEGNGGPGTIKKLTFEEDGQTKELLHKIDSIDQANLKYNYSIVGGTDLPATVEKISFEAHLVVGSNGGSIAKHNINYHTKGNASFSEEEVMAGKAKGDALFKAIEGYVLANPDYN* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2280 157 PANTHER ABA-RESPONSIVE PROTEIN 3 156 - -
Lja6g2280 157 ProSitePatterns Pathogenesis-related proteins Bet v I family signature. 87 119 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lja6g2280 157 SUPERFAMILY Bet v1-like 6 157 - -
Lja6g2280 157 Pfam Pathogenesis-related protein Bet v 1 family 6 153 IPR000916 GO:0006952
Lja6g2280 157 PANTHER - 3 156 - -
Lja6g2280 157 Gene3D - 2 157 IPR023393 -
Lja6g2280 157 PRINTS Major pollen allergen Bet V1 signature 108 124 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lja6g2280 157 PRINTS Major pollen allergen Bet V1 signature 83 96 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lja6g2280 157 PRINTS Major pollen allergen Bet V1 signature 64 83 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lja6g2280 157 PRINTS Major pollen allergen Bet V1 signature 2 22 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lja6g2280 157 PRINTS Major pollen allergen Bet V1 signature 48 57 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lja6g2280 157 PRINTS Major pollen allergen Bet V1 signature 25 35 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lja6g2280 157 PRINTS Major pollen allergen Bet V1 signature 142 152 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lja6g2280 157 CDD Bet_v1-like 5 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2280 Lja-Chr6 51734360 51735296 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2280 - - gmx:100500525 228.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2280 6 51734360 51735296 Lja6g2280 6 51734360 51735296 ECH