Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2271 ATGTCATCTTTGAGTAGGGAATTGGTGCTTCTCATTCTTCAATTTCTTGAGGAGGAGAAGTTCAAGGACACTGTACACAAGCTTGAGCAAGAATCTGGGTTCTACTTCAATATGAAGTATTTTGAAGAGAAGGCCCTGGCTGGAGAGTGGGATGAGGTTGAGAAGTATCTGTCTGGGTTTACTAAAGTGGATGACAATCGATATTCCATGAAAATATTCTTTGAGATTAGGAAGCAGAAGTATCTTGAAGCCTTGGACAGGCGTAACAAACCGAGGGCTGTTGAAATTCTGGTGAATGATTTGAAAAGTTTTTCAACATTTAATGAAGATTTGTACAAAGAACTAACACATCTTCTAACCCTTGAGAACTTCAGGGAAAATGAGCAGTTATCGAAGTATGCTGATACTAAATCAGCTCGAAACATAATGCTTTTGGAGCTTAAGAAATTGATAGAAGCAAATCCCCTCTTTCGAGACAAGCTTATACTTCCTTCGTTGAGGGCATCACGGTTACGAACCCTGGTTAATCAAAGTTTAAATTGGCAGCATCAGCTGTGCAAGAACCCAAGACCGAATCCAGACATCAAAACTTTATTCACTGACCATACTTGTTCACCTCCAAATGGAGCTCATGCACCTACTCCTGTCACCCTTCCTATTTCAGCTGGTGCAAGGCCTTCATTTTTTGCTCCACTTGGAGCACATGGTGGACCATTTACACCAGCCCCTCCAGCTGCTAATGTTAATGCTTTGGCGGGATGGATGGTGAATGCAAATCTGTCCACATCTGCTCAATCATCTGTAGTTGCTGCTTCCTCATTCTCTGGTCACCCAAATCAAGGTTCTATTTTGAAGCATTCAAGAACACCTAATACTCTTGGAATGATGGATTACCAAAATAATGATCATGATCATCTAATGAAACGGTTGCGGACTGCACATTCTGTTGACGAGGTCACAAATCCCGCTCCACCTCAACAAGTGTCTTGGTCACTTGATGAGCTTCCTAGAACTGTTGTTTGTACCTTACATCAGGGATCAACAGTGACAAGCATGGATTTTAATCCTTCCCTTCATTCTGTACTCGCTGTTGGTTGTGCAAATGGTGAAATTTCACTTTGGGAAGTAGGGCTGAGAGAGAAGCTGATATCGAAGCCTTTCAAAATATGGAATATTTCTGCTTGTCCTGCCTTATTTCAGGCTGCAATTGTGAAAGACTCATCTATATCCGTCAATCGTGTATCATGGAGCCCAGATGGGAATTTTATTGGGGTTGCTTTTACGAAGCATTTGATTCATTTGTATACCTATCAAGCACCTAATGACCTACAGCAGCGTTTGGAGATTGATGCCCATGTCGGTAGTGTTAATGACTTGGTATTTTCATATCCAAACAAACAGCTATGCATTGTAACTTGTGGAGATGATAAGTTAATAAAGGTGTGGGATTTAAATGGGCAGAAACTCTTTAACTTTGAAGGTCATGGAGCACCTGTTTATTCTGTTTGTCCTCACCAGAAGGAAAAGATACAGTTTATATTTTCAACTGCGGTTGATGGGAAAATTAAGGCCTGGCTGTATGATAACATAGGCTCCAGGGTGGACTATGATGCTCCCGGGCAGTGGTGCACCACAATGCTCTACAGTGCTGATGGAAATAGATTGTTCTCTTGTGGGACAAGCAAAGATGGAGACTCTTTCCTAGTCGAGTGGAATGAAAGTGAAGGAGCAATAAAAAGAACATATTCTGGGTTCAGAAAGCAATCTGCCGGCATTTTGCAATTTGACACTACAAAGAATCGCTTTTTGGCTGCTGGTGAAGATAACCAGATTAAGTTTTGGGATGTGGATAATACCAATGTTCTGACTAGTACAGATGCTGAGGGTGGTCTTCCTAGTCTCCCTCACTTGAGGTTCAATAAGGAAGGAAATCTGCTTGCTGTTACTGCATCAGGCGGTGGCTTGAAAGTCCTTGCTAATGCAGATGGCATCAAATTCTTAAGAACTATTGAAGCTCGGTCATATGAAGGACCTAAAGCACCTATTGAAACAAAGAATGGATTTGATTCTATGGCTAGAAGCACAGAGAAGAAAAGGAGTTTTGATGATGTATCGGACAGATCTAGAGCTTGGGAATTGGCAGAAATAGTTGATCCTGTTCAGTGTCGAATGGTCACTGTGCCAGATAGTATGGGTCCCCTTAACAAGGTTGCTCGTCTTCTTTACACAAATTCTGGGGCTGGTCTTCTGGCTCTTGGTTCAAAAGGGTTTCAGAGGCTGTGGAAATGGAGCCGCAATGAACTGAATCCTACTGGGAAGGCCACGGCTAGTGTTGTTCCTCAACATTGGCAACCAAATAATGGTCTTCTCATGAATAATGATGTCCGAGACAATTCTGAAGCAGCTGTTCCCTGCATAGCGCTCTCAAAGAATGATTCCTATGTTATGTCTTCATGTGGAGGAAAAATTTCACTGTTCAACATGATGACATTTAAGATAATGACAACTTTTATGAGACCTCCTCCTTGCTCAACCTTCCTTGCATTTCACCCTCAAGATAATAACATCATTGCAATTGGAATGGAAGATTCAACTATTCATATTAACAATGTTAGGGTGGACGAGGTGAAATCTAAATTGAAGGGTCACCAGAAGCACATCACCGGTTTAGCATTTTCAACTCAACTTAATACCTTGGTTTCATCAGGTGCTGATGCCCAGCTTTTCTTTTGGAGCATTGATTCCTGGGATAAGAAGAAATCACTGTCAATCCCAATGCCTGCTGGAAAGGCACCTGTTGGTGACACTCGTGTGCAATTCCATATTGATCAAGTAAAGTTGCTGGTATCCCATGAGACGCAGCTAGCAATATATGATGCTTCAAAAATGGAATTGATTCGGCAGTGGGTGCCACAAGATGGATTTTCTGGTTCCATATCCTCTGCAACATATTCCTGCAACAGCCAACTAGTTTATGCTGCTTTCACTGATGGAAATATTGGAGTATTTGATGCTGACAGCCTGAGACTAAGATGTCGTATAGCTTCATCTGCATACCTACATCAGACTTCATCAAACAGCCAAAATGTGTACCCTGTTGTTGTCACAGCACATCCACAGGAACCAAATCAATTTGCAGTTGGACTTTCAGATGGGTCTATCAAGGTTATAGAGCCTACAGAGTCTGAAGGAAGGTGGGGAATTAAGGAACCTGTTGATAATGGTAGGACAGCCTCACCCTCAATCACAAACAACCCCACTCCTGAGCAGCTCCAAAGATGA 3282 0.4211 MSSLSRELVLLILQFLEEEKFKDTVHKLEQESGFYFNMKYFEEKALAGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRRNKPRAVEILVNDLKSFSTFNEDLYKELTHLLTLENFRENEQLSKYADTKSARNIMLLELKKLIEANPLFRDKLILPSLRASRLRTLVNQSLNWQHQLCKNPRPNPDIKTLFTDHTCSPPNGAHAPTPVTLPISAGARPSFFAPLGAHGGPFTPAPPAANVNALAGWMVNANLSTSAQSSVVAASSFSGHPNQGSILKHSRTPNTLGMMDYQNNDHDHLMKRLRTAHSVDEVTNPAPPQQVSWSLDELPRTVVCTLHQGSTVTSMDFNPSLHSVLAVGCANGEISLWEVGLREKLISKPFKIWNISACPALFQAAIVKDSSISVNRVSWSPDGNFIGVAFTKHLIHLYTYQAPNDLQQRLEIDAHVGSVNDLVFSYPNKQLCIVTCGDDKLIKVWDLNGQKLFNFEGHGAPVYSVCPHQKEKIQFIFSTAVDGKIKAWLYDNIGSRVDYDAPGQWCTTMLYSADGNRLFSCGTSKDGDSFLVEWNESEGAIKRTYSGFRKQSAGILQFDTTKNRFLAAGEDNQIKFWDVDNTNVLTSTDAEGGLPSLPHLRFNKEGNLLAVTASGGGLKVLANADGIKFLRTIEARSYEGPKAPIETKNGFDSMARSTEKKRSFDDVSDRSRAWELAEIVDPVQCRMVTVPDSMGPLNKVARLLYTNSGAGLLALGSKGFQRLWKWSRNELNPTGKATASVVPQHWQPNNGLLMNNDVRDNSEAAVPCIALSKNDSYVMSSCGGKISLFNMMTFKIMTTFMRPPPCSTFLAFHPQDNNIIAIGMEDSTIHINNVRVDEVKSKLKGHQKHITGLAFSTQLNTLVSSGADAQLFFWSIDSWDKKKSLSIPMPAGKAPVGDTRVQFHIDQVKLLVSHETQLAIYDASKMELIRQWVPQDGFSGSISSATYSCNSQLVYAAFTDGNIGVFDADSLRLRCRIASSAYLHQTSSNSQNVYPVVVTAHPQEPNQFAVGLSDGSIKVIEPTESEGRWGIKEPVDNGRTASPSITNNPTPEQLQR* 1094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2271 1093 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 685 IPR027728 GO:0006355
Lja6g2271 1093 SMART ctlh 34 92 IPR006595 -
Lja6g2271 1093 PANTHER TRANSDUCIN FAMILY PROTEIN/WD-40 REPEAT PROTEIN 1 685 - -
Lja6g2271 1093 MobiDBLite consensus disorder prediction 1076 1093 - -
Lja6g2271 1093 ProSitePatterns Trp-Asp (WD) repeats signature. 470 484 IPR019775 -
Lja6g2271 1093 ProSiteProfiles Trp-Asp (WD) repeats profile. 593 624 IPR001680 GO:0005515
Lja6g2271 1093 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 337 528 IPR011047 -
Lja6g2271 1093 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 880 915 - -
Lja6g2271 1093 Gene3D - 730 930 IPR015943 GO:0005515
Lja6g2271 1093 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Lja6g2271 1093 SMART WD40_4 962 1004 IPR001680 GO:0005515
Lja6g2271 1093 SMART WD40_4 1016 1058 IPR001680 GO:0005515
Lja6g2271 1093 SMART WD40_4 575 615 IPR001680 GO:0005515
Lja6g2271 1093 SMART WD40_4 873 912 IPR001680 GO:0005515
Lja6g2271 1093 SMART WD40_4 830 870 IPR001680 GO:0005515
Lja6g2271 1093 SMART WD40_4 485 526 IPR001680 GO:0005515
Lja6g2271 1093 SMART WD40_4 791 827 IPR001680 GO:0005515
Lja6g2271 1093 SMART WD40_4 336 375 IPR001680 GO:0005515
Lja6g2271 1093 SMART WD40_4 529 572 IPR001680 GO:0005515
Lja6g2271 1093 SMART WD40_4 397 436 IPR001680 GO:0005515
Lja6g2271 1093 SMART WD40_4 442 483 IPR001680 GO:0005515
Lja6g2271 1093 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 457 1061 IPR011047 -
Lja6g2271 1093 Pfam WD domain, G-beta repeat 879 912 IPR001680 GO:0005515
Lja6g2271 1093 Pfam WD domain, G-beta repeat 449 483 IPR001680 GO:0005515
Lja6g2271 1093 PANTHER TRANSDUCIN FAMILY PROTEIN/WD-40 REPEAT PROTEIN 678 1085 - -
Lja6g2271 1093 ProSiteProfiles Trp-Asp (WD) repeats profile. 880 921 IPR001680 GO:0005515
Lja6g2271 1093 Gene3D - 533 677 IPR015943 GO:0005515
Lja6g2271 1093 SUPERFAMILY WD40 repeat-like 564 778 IPR036322 GO:0005515
Lja6g2271 1093 ProSiteProfiles Trp-Asp (WD) repeats profile. 449 492 IPR001680 GO:0005515
Lja6g2271 1093 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Lja6g2271 1093 MobiDBLite consensus disorder prediction 1064 1093 - -
Lja6g2271 1093 Gene3D - 931 1073 IPR015943 GO:0005515
Lja6g2271 1093 Pfam LisH-like dimerisation domain 5 33 - -
Lja6g2271 1093 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 678 1085 IPR027728 GO:0006355
Lja6g2271 1093 Gene3D - 256 532 IPR015943 GO:0005515
Lja6g2271 1093 SMART Lish 4 36 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2271 Lja-Chr6 51583389 51593637 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2271 - - qsu:112005985 1707.19