Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2246 ATGGAGTTCCTAACAACCAGACTCATTGTCATTTCACTCTCTGCATTCTCATTTTTCCCACTATCTTGTTCTGAGTATACAACTTCAGATAGATCAAAATTGCCCATATTCGCTTTCAGTTGGTGGGATGATAAGGGCACATTCAAGGCTGGTGAAACAGCAGTTATTAAGGTCAAAGTGCTTGAAAATGGTGATAAGATTGATAGAAATGCTTTTCAGCCTATACTCACTGTGAATGGAAAGGAAGGGAATAGTTCCTATGTATCCACGGTGTTCTCGGATTTCAAAGGAGACTTTGATGATTGGAAGATTTGCTTCGCCCCCATCAGGGTTGGATTGTTTAATGTGCTCATCAATGAGGACCGTTATAAAGTTCTTGATTCGTCACTGCATTTCCAAGTCGAGCCAGGGAACATGTACCCGTCTGTGTGTGTGGCATCATGGAAAGGCCTTAAATATGAGTTTGAAGCTGGTTCTAAAGCTACAATTATGGTGCTCCTCAAAGATGCATTTGGGAACAGTATCTCCAAGACGAATGACGTGTCCTATTTACCTGATTTTAAGTTGTTTGTGTTGAGCGAAAATGGTTCTGTTACAAGTGAGCCAGATATCTCCAACATGGGGTGGAATGAGTTTGATTATATAGTCATTGAGTTTTTTGTGATGCAAGCTGGAAACTTCTCCTTGCTCATAGAAGGAGGAAATCAAACCTTGAATGGTTCTCCATTACCATTAAAAGTGAATCCAGGAGCTATAGATGTCTCTAACTGTATGGCCAAATGGAACATTGAACCACATGCATGGCAATTGGCTTCCAAGATGGAAATCTTTATACATCAGTTGGATCAATATGGAAATCTGGTTTCTGGATTGTACCCATTTGATGCTGACATTGTTGAAAGAGATACAAACTTGACAATACCTATAGCAGATCTTCTCTTTGAGGAAGTGGATTCTGGGATTCAGTTGTTTTCCTTTAGCAATCTGGAGCCAGGGAACTTCCTGCTAACAATATATGATAGCAAGCATAATAAGAGCATTTCCAATATGCCATATGTTTATACTGTTTTTGTTGGTTATTGTGATGGGGTGAAAAGTGTTGTAAATGGATCTGGTTTAAATGATTCAGTAGCTGGAGTAAGGGCAGAGTTCTCTGTATATTTGAATGACATCTATCAATATCCTTCCCCAGTGGAAGCAGACATACTTCAAGTACAAATCTTAAGAGAAAATGATAACTACAGTGTTTCGCCAACCATATATCCTAAGCTAAATAAAAATGGGAGCATAATAGCTTCAGGAATGCCATATGATGGTATAGGTCGCACGGAAGCTGCCCCGTCTCCTTCTATATCGTTGAGCAACAATTCTGGGAGCAGGAGCCCTGTTGTAGCCAGTGCATTTAATGTGGAATACACACCAGATAAAAGTGGCTTTTTCGATATTAATGTATATTGTGGAAACATAATACTGAATGAGGGTCATGCATTCAGAAAAGAGGTAAAAGCAGGTGAAGTAAATATTTCATTGTCAAGTGTTGCGAGGTTTTCTTCCAAGGTGCCAAAGCTGTCGAAAAATGAAATAGTTGTGCAGCTTATGGATTCATATCTAAACCCTGTTCTCTCACAACAGTCAAAATTGAAATTGGAGATTGCTTCAATTAATATCTCTAGGTTTTCAACTTGGGACACTGTGGATAATAAGGATGGTTCATACAGCTGCAGCTATATGGCTAAAGATGTTGGCACTTACGAGATTTGCCCTTCCTTTGATGGCAAGCGCTTCTTGGCATGTCCCCTCAGTATCAATGTGTACAGTAGTGAATATTTTCCCAAAGCCAACAATGATACAGTATCTATTTGGGAGGATGAATCCATTGCCATTGATGTCTTGGCAAATGATTATTTTGCGGGTGACAATGCACGTATAGTTGAATTTTCAAAATCAGATCATGGCTCACTTATACAGAATGGAAGGATCTTTCGCTACACTCCCTATGAAGATTATTATGGAAATGATTATTTTTGGTACACAATATCTGATATAAATGGAAATCTTGCTACTGCTTCTGTGCACATATCCGTTCTCAATATTCCACCTCAGTTTGCTTCTGCTCCAAGCCAACTGCAAGCAACAGAGGACTTAATAAGCCCTAGATTTGGTGGTTTTTCTGGGTTTGAAATCACTTACTCAAATCCAAAGGAGAGTATTTCTGTCAATCTGAGTGCATTATCTGGAAGTATACTTCTGTCTCCCTTGGTGATGCAATTTGGACAACCAGTGTGGAATGAACTTTCAATTAATACAGGAAATGAAACAGCAACCAGTTTACTATTAGAAGGCACTGTGGAAGAAATTAATTTTGCGCTTCAGTCAATTCAGTACCTGGGAAATGAGAATTTTTATGGTGCAGATACCATTAAAGTCTCTGCCAAGAATAAGAATGGAATAAATTCATTGGGTGTCCCAATTTTTGTTGATCCTATAAATGATCCTCCATATATTAGAGTTCCTTCCTTCATTATATTGAGGAGCAATGAAGAAGAGACCCATATCTTTGATAAAGAGAAAGACAAGTTTGACTTTTTGATTGGAGATTCCGATCTTCCGACTTTCCCTGTTGGGGAGAGTCACTTTCTTGTGTCATTCTCTGTGGAAGTAAGTGATGGATTATTAGCAACAAATCTCCCAGCTCATTTGATCAATACAACTGAACTGAAGCACATGTATAATTGTCAGTGGCAACCTCTTCAGACATATGTAACCATCTCAAAGCACTTTATGGTCAAAGCTACTGGAATCAGATTTCATGGCACAATCAATGACTGCAATAGTGTTATGCAGCAATTGTTCTATCTTGGAGGTGAGCATGGAGCTGTTTTAACATTAACAGTGAATGACATGGGAAACTATGGGTGTTATCCAGGTTGTGCAGAGGGGATGTCAATGCCATTATACACTGAGGCTATGGTTAATTTAATGAGAAAGACGCCTATGAGTTCATTCCTTGCACATACCTTAGGATCAATCATCGTCATTGAATTTGTCATCATTTTCTCTCTTGGAGTGTTACTTCTATACTTAACCTGCAAATGCGCAATTCTGCTCGTACATGAAAGAAGAAACCGTGAGAAAAGGGCTTCAGACTTACAAATTTTCTCATTGTCAAATGATTTAAAATTTTCCTTAGAATCTAAAACTGAACTAAGTATGAGAAGTTTCACAACCTCTACATTAAATCTTCTATTTAATTCATATAGTTGCAAATCAATTGCAGAATAA 3282 0.3839 MEFLTTRLIVISLSAFSFFPLSCSEYTTSDRSKLPIFAFSWWDDKGTFKAGETAVIKVKVLENGDKIDRNAFQPILTVNGKEGNSSYVSTVFSDFKGDFDDWKICFAPIRVGLFNVLINEDRYKVLDSSLHFQVEPGNMYPSVCVASWKGLKYEFEAGSKATIMVLLKDAFGNSISKTNDVSYLPDFKLFVLSENGSVTSEPDISNMGWNEFDYIVIEFFVMQAGNFSLLIEGGNQTLNGSPLPLKVNPGAIDVSNCMAKWNIEPHAWQLASKMEIFIHQLDQYGNLVSGLYPFDADIVERDTNLTIPIADLLFEEVDSGIQLFSFSNLEPGNFLLTIYDSKHNKSISNMPYVYTVFVGYCDGVKSVVNGSGLNDSVAGVRAEFSVYLNDIYQYPSPVEADILQVQILRENDNYSVSPTIYPKLNKNGSIIASGMPYDGIGRTEAAPSPSISLSNNSGSRSPVVASAFNVEYTPDKSGFFDINVYCGNIILNEGHAFRKEVKAGEVNISLSSVARFSSKVPKLSKNEIVVQLMDSYLNPVLSQQSKLKLEIASINISRFSTWDTVDNKDGSYSCSYMAKDVGTYEICPSFDGKRFLACPLSINVYSSEYFPKANNDTVSIWEDESIAIDVLANDYFAGDNARIVEFSKSDHGSLIQNGRIFRYTPYEDYYGNDYFWYTISDINGNLATASVHISVLNIPPQFASAPSQLQATEDLISPRFGGFSGFEITYSNPKESISVNLSALSGSILLSPLVMQFGQPVWNELSINTGNETATSLLLEGTVEEINFALQSIQYLGNENFYGADTIKVSAKNKNGINSLGVPIFVDPINDPPYIRVPSFIILRSNEEETHIFDKEKDKFDFLIGDSDLPTFPVGESHFLVSFSVEVSDGLLATNLPAHLINTTELKHMYNCQWQPLQTYVTISKHFMVKATGIRFHGTINDCNSVMQQLFYLGGEHGAVLTLTVNDMGNYGCYPGCAEGMSMPLYTEAMVNLMRKTPMSSFLAHTLGSIIVIEFVIIFSLGVLLLYLTCKCAILLVHERRNREKRASDLQIFSLSNDLKFSLESKTELSMRSFTTSTLNLLFNSYSCKSIAE* 1094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2246 1093 Pfam Filamin/ABP280 repeat 525 599 IPR017868 -
Lja6g2246 1093 Pfam Filamin/ABP280 repeat 360 488 IPR017868 -
Lja6g2246 1093 SUPERFAMILY E set domains 140 258 IPR014756 -
Lja6g2246 1093 ProSiteProfiles Filamin/ABP280 repeat profile. 566 604 IPR017868 -
Lja6g2246 1093 SUPERFAMILY E set domains 360 489 IPR014756 -
Lja6g2246 1093 Gene3D Immunoglobulins 512 606 IPR013783 -
Lja6g2246 1093 Gene3D Immunoglobulins 136 254 IPR013783 -
Lja6g2246 1093 Gene3D - 607 693 - -
Lja6g2246 1093 Pfam Bacterial Ig domain 601 684 - -
Lja6g2246 1093 PANTHER JITTERBUG, ISOFORM N 198 1002 IPR044801 GO:0030036|GO:0051015
Lja6g2246 1093 PANTHER JITTERBUG, ISOFORM N 28 138 IPR044801 GO:0030036|GO:0051015
Lja6g2246 1093 PANTHER JITTERBUG, ISOFORM N 198 1002 - -
Lja6g2246 1093 PANTHER JITTERBUG, ISOFORM N 28 138 - -
Lja6g2246 1093 Gene3D Immunoglobulins 323 510 IPR013783 -
Lja6g2246 1093 SUPERFAMILY E set domains 526 607 IPR014756 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2246 - - ccaj:109808168 1756.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2246 6 51408466 51417734 Lja6g2246 6 51408466 51417734 ECH