Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2245 ATGCTTGCGGAGGAGAAATACCAAAAGGCATACCCGACAACTGCTGAGGTGGTGGACGAGCTAAAGAAAATGACAGACATAGGTTTCCCAATAGCAGTCATGGGCCTCGTGGGATACCTCAAGAACATGATCTCAGTTGTGTGCATGGGAAAGTTAGGAAGCCTCGAGCTAGCAAGTGGTGCCTTAGCCATAGGCTTCACAAACATCACCGGTTACTCTGTCCTCTCCGGTCTCGCCATGGGCATGGAGCCACTCTGCACTCAAGCCTTTGGTTCGCAAAACTTCTCCTTGCTCTCTCTTACTCTGCGTAGAACAATTTTCATGTTACTACTCGTTTCTCTTCCTATCTCTCTCTTCTGGCTCAACCTCGAACCTTTCATGTTGAGCCTTCACCAGAACCCGGAGATAACAAAAGTGGCGAGCCTCTATTGCCGGTTTTCGATCCCAGATCTCGTTGCTAACAGCTTTCTTCACCCAATTCGGATCTATTTACGTAGCAAAGGGACAACTTGGCCCCTCATGTGGTGCACGTTGCTTTCTATTCTTTTGCACATTCCAGTGACCACTTTTTTTACATTCAAACTGCAACTTGGTGTGCCCGGGATTGCTGTCTCTTCCTTTGTTGCCAATTTCAACACCCTTTTCTTCCTTCTCTCGTACATGCTCTACATGCATGTCACCAAAGTGTCACTATCAGCGCCACTACTCACATCACAACCAGAAAAGTTAACCACCATTACCACCCTAGGTAAAGAATGGAGTGTGCTAATAAGGTTTTCTATTCAGAGTTGCCTTGGTGTGTGCTTGGAGTGGTGGTGGTACGAGTTCATGACAATTCTAGCAGGTTATCTTCACAACCCTCGGGTAGCTCTAGCCACTGCTGGCATAGTGATACAAACAACGTCTCTCATGTACACTTTGCCAACAGCACTAAGTGCTTCTGTGTCAACCAGAGTAGGGAACGAGCTCGGAGCGGGTCAACCGGAAAGAGCCAGCTTGTCAACCGTGGTAGCCATAGGAATGGCCCTAGCAAGCTCCATGTTGGGGTTGTTATGGACCACATTAGGTAGAGAAAAATGGGGGAGGGTGTTCACAAGTGATAGTGAGGTGTTGTCACTAACCATGGCAGTGTTGCCTATAATTGGAGTGTGTGAGCTTGCAAACTATCCTCAAACAACAAGCTGTGGAATTTTGAGAGGGAGTGCAAGGCCAGGTGTTGGTGCTGGAATAAACTTTTACTCATTCTACTTGGTTGGTGCCCCAGTGGCCATGTTGTTAGGGTTTGTTTGGAGATTAGGGTTGGTGGGGCTATGTTATGGGCTGTTGGCTGCCCAAATAGCATGTGTGGTCTCAGTTCTGGTTGTGGTATACAACACAGATTGGGAAAGGGAGTCATTGAAGGCAAAAAACTTGGTGGGAAATAAGAGCTTTTCATCATGTGGAGCACATGCTGATGACCAAACAGTCAAATGTGAAGAAGGTCTTGTCTTTCTCAGTGAGAACAACTCCTTAAAGTGA 1518 0.4704 MLAEEKYQKAYPTTAEVVDELKKMTDIGFPIAVMGLVGYLKNMISVVCMGKLGSLELASGALAIGFTNITGYSVLSGLAMGMEPLCTQAFGSQNFSLLSLTLRRTIFMLLLVSLPISLFWLNLEPFMLSLHQNPEITKVASLYCRFSIPDLVANSFLHPIRIYLRSKGTTWPLMWCTLLSILLHIPVTTFFTFKLQLGVPGIAVSSFVANFNTLFFLLSYMLYMHVTKVSLSAPLLTSQPEKLTTITTLGKEWSVLIRFSIQSCLGVCLEWWWYEFMTILAGYLHNPRVALATAGIVIQTTSLMYTLPTALSASVSTRVGNELGAGQPERASLSTVVAIGMALASSMLGLLWTTLGREKWGRVFTSDSEVLSLTMAVLPIIGVCELANYPQTTSCGILRGSARPGVGAGINFYSFYLVGAPVAMLLGFVWRLGLVGLCYGLLAAQIACVVSVLVVVYNTDWERESLKAKNLVGNKSFSSCGAHADDQTVKCEEGLVFLSENNSLK* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2245 505 PANTHER MULTIDRUG RESISTANCE PROTEIN 12 477 - -
Lja6g2245 505 CDD MATE_eukaryotic 20 467 IPR045069 GO:0042910|GO:1990961
Lja6g2245 505 Pfam MatE 264 424 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja6g2245 505 Pfam MatE 30 188 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja6g2245 505 PANTHER PROTEIN DETOXIFICATION 55 12 477 - -
Lja6g2245 505 TIGRFAM matE: MATE efflux family protein 37 437 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2245 Lja-Chr6 51396457 51399293 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2245 K03327 - gmx:100785533 825.469
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2245 6 51396457 51399293 Lja6g2245 6 51396457 51399293 ECH