Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2237 ATGTTTAGTGGAGCCAGAGCCAGCAAAAATCACAGTGTGTTCCACCGCGTTCTACAACGCTCCAGAGCTTCTATGGACTCCACAACCGCCGCTAAAACTCACGCAAAACTCATTGTACACGGGTATGCCACTTACCCATCTCTTGTGGCGGCTCTGATATCAACCTATGCTCGCTGTCACCAACCCCACATTGCCCATCACGTTTTCTCCCGAGTTATGGATACCTTCAGCAAGAATTTAGTGATTGAGAGCTTGATGAAAGCTGGGGAATGTGACATTGCCAGGAAGGTGTTTGACAAAATGCCTGTTAGAGATGTGGTCACATGGAACACTTTGATTGGAGGGTATGTTAAAAATGTGCGCTTTCTTGACGGGTTGAGGCTTTTCCGTGGCATGCTGAGTGCCGAGGTTGAGCCTGATGGGTTCACCTTTGCTTCTGTTGTTACCGGGTGTGCGCGCCTTGGGGCTCTTTGCAATGCCAAGTGGGTGCATGGTTTGATGCTTGAGAAAAGGGTTAAACTGAATTATATATTGAGTGCTGCATTGGTTGACATGTATGCTAAGTGTGGTAGGATTGATGTTTCAAAGCAAGTTTTTGACACTGTGGCGCGTGATCATGTGTCTGTTTGGAATGCTATGATTAATGGGTTAGCGGTTCACGGGCTTGCTTTGGATGCTATTGCTGTTTTTTCAAGGATGGAGGTGGAAAATGTTTTGCCGGATTCCATTACCTTTGTTGGGATTCTTAAAGCATGTAGCCACTGTGGATTGGTTAACGAAGGTCGTGAGCACTTTAATATAATGCAGAATCGGTTCTTGATTCAGCCGCAACTTGAGCATTATGGAACCATGGTTGATCTCTTGGGACGAGCAGGGAACTTGGAAGAAGCCTGTAATATGATTAAGGCTATGCCGGTGGAGCCTGATGTTGTTATCTGGAGAGCACTTCTGAGTGCATGTAGAATTCACGGAAAGAAAGAACTAGCTGAATTTGCCATTGCAAATATTTCCCGTCTTGAGAGTGGAGATTTTGTCTTACTATCAAATATGTATTGCTCTTTAAAGAACTGGCATAATGCTGAGAGAGTGAGAAATATGATGAAAATAGGAGGAGTTCGTAAAAAGCGGGGTAAGAGTTGGATTGAATTGGGGGACAGCATCCACCAATTTAATGCAGCTGATCAGTCACATGCTGAAATGAAAGCAATTCACAGGGTGCTGGAAGGTTTGATCCAGAGAGCTAAGTTGGAGGGCTTCACCCCCTTGACGGATCTCGTATTGATGGATGTTTCTGAAGAGGAAAAGGAGGAAAATTTAACATATCATAGTGAGAAGTTGGCCTTGGCCTATGGGATTCTGAAAAGTAGCCCTGGAACAAAAATTAGGATTTCCAAAAACCTGCGTATCTGTCAAGACTGTCATAATTGGTTTAAAATTGTTTCAAGAATATTAAACAGAGAGATAATTGTGAGAGATCGCATCCGTTTTCACCAATTTGAGGGCGGATTTTGCTCTTGTGGAGACTACTGGTAG 1533 0.4403 MFSGARASKNHSVFHRVLQRSRASMDSTTAAKTHAKLIVHGYATYPSLVAALISTYARCHQPHIAHHVFSRVMDTFSKNLVIESLMKAGECDIARKVFDKMPVRDVVTWNTLIGGYVKNVRFLDGLRLFRGMLSAEVEPDGFTFASVVTGCARLGALCNAKWVHGLMLEKRVKLNYILSAALVDMYAKCGRIDVSKQVFDTVARDHVSVWNAMINGLAVHGLALDAIAVFSRMEVENVLPDSITFVGILKACSHCGLVNEGREHFNIMQNRFLIQPQLEHYGTMVDLLGRAGNLEEACNMIKAMPVEPDVVIWRALLSACRIHGKKELAEFAIANISRLESGDFVLLSNMYCSLKNWHNAERVRNMMKIGGVRKKRGKSWIELGDSIHQFNAADQSHAEMKAIHRVLEGLIQRAKLEGFTPLTDLVLMDVSEEEKEENLTYHSEKLALAYGILKSSPGTKIRISKNLRICQDCHNWFKIVSRILNREIIVRDRIRFHQFEGGFCSCGDYW* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2237 510 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 206 240 IPR002885 -
Lja6g2237 510 Gene3D Tetratricopeptide repeat domain 17 161 IPR011990 GO:0005515
Lja6g2237 510 Pfam PPR repeat family 207 253 IPR002885 -
Lja6g2237 510 Pfam PPR repeat family 104 153 IPR002885 -
Lja6g2237 510 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 105 139 IPR002885 -
Lja6g2237 510 PANTHER OS07G0578800 PROTEIN-RELATED 7 456 IPR045215 GO:0003723|GO:0009451
Lja6g2237 510 Pfam PPR repeat 280 304 IPR002885 -
Lja6g2237 510 Pfam E motif 323 382 IPR046848 -
Lja6g2237 510 Pfam DYW family of nucleic acid deaminases 418 510 IPR032867 GO:0008270
Lja6g2237 510 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 7 456 - -
Lja6g2237 510 Gene3D Tetratricopeptide repeat domain 197 407 IPR011990 GO:0005515
Lja6g2237 510 TIGRFAM PPR: pentatricopeptide repeat domain 107 140 IPR002885 -
Lja6g2237 510 TIGRFAM PPR: pentatricopeptide repeat domain 209 241 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2237 Lja-Chr6 51325023 51327791 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2237 79 510 Glycoside Hydrolase AT3G49170 39.180 2.29e-107 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2237 - - gmx:100788229 825.854