Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2236 ATGAAACAGTACACTTTCTATTCCTCATCATTGGAAATGTTGATACAATTCATCAACAACCTTATTATTTCTCCTTCCCATATTTTTGCAATGCTTTTGTTAGCAGGTATAGCAATCATCTACTTTGCATTCAGAAGAAAAGTATCCTTTTACTTGATAGACTTCACCTGCTACTGTCCACCCAGTTCATATAGGCTACCAATAGCCATGTTCAAAGAAAACACTCTTGTTGAAAACATGGATCCAGAGGCTGTTGATTTCCAATGCAAGATCATATCAAAATCTGGATTCAGTGAACTAACATCAATTCCCCAATCTCTTGCTCAAGTCCCCAAAATAAAATCCCTCACATGTGCCCTTGAGGAGGCTGAAACAACAATATGTTCAGCAATCACAGAACTCTTTCAGAGAAATAACATCAACCCAAAATCCATTGACATACTCATTACAAACAGCAGCGTCTTCTGTCCTACCCCATCTCTCAGTGCCATGGTGGTTAACAAGTTCAAGATGAGGAGCAACATCATGAGCTTCCACCTCTCAGGCATGGGATGCAGTGCTGGAATCATATCAGTGAGTCTGGCTAAAGATTTATTGAGAGTTCATCAGAATTCACTAGCTTTAATAGCTAGCACAGAGACACTGAGTTTAAATTGGTACACAGGGAAAGTCCCTTCCATGCTGCTAACTAATTGCTTATTCAGAATGGGTGGAGCTGCTATATTAATGTCTAGCAGGAGACAAGATAAGCATAAGGCAAAGTATGAGCTGAAGCATACTGTTAGAACAATCAATGCACATGATGATCAATCTCATGGCTGTGTCAGCCAGGAAGTGGATCCAGAGAACATTGAAGGTGTGTCGATATCAAAGAACATTGTCCAAGTGGCTGGAAATGTTCTGAAGAAAAACATAGCTTCACTTGGACCATTGGTTTTGCCATGGAGGGAGCAATTCTTGTTTGTTTTTTCCATTGTTTGTCAGAAACTGTGGAGTGCAAGCATCTACACTCCGAATTTCAATCACGCTTTTGATCATTTCTGCATACATTCAGGGGGGCGAGCCGTTATACAAGCCATGGAAAGAAACTTGAGGTTGAGGAAACAGGACGTTGAACCGTCAAACATGACTCTTTACAGGTTTGGAAACACTTCATCTGCTTCAATTTGGTATGAGCTGAGCTACATAGAAGCAAAAGGGAGGATGAAACGGGGTGATACGGTGTGGCAAATTGCCTTTGGAAGTGGATTCAAGTGCAACAGTGCAGTGTGGAAATGTCTATGCGATGTGAAACCAGATACCACCAGTGCATGGAGGGATACAATTCACAATTACCCTGTAGATATTGTGAGAACAAACTGA 1362 0.4104 MKQYTFYSSSLEMLIQFINNLIISPSHIFAMLLLAGIAIIYFAFRRKVSFYLIDFTCYCPPSSYRLPIAMFKENTLVENMDPEAVDFQCKIISKSGFSELTSIPQSLAQVPKIKSLTCALEEAETTICSAITELFQRNNINPKSIDILITNSSVFCPTPSLSAMVVNKFKMRSNIMSFHLSGMGCSAGIISVSLAKDLLRVHQNSLALIASTETLSLNWYTGKVPSMLLTNCLFRMGGAAILMSSRRQDKHKAKYELKHTVRTINAHDDQSHGCVSQEVDPENIEGVSISKNIVQVAGNVLKKNIASLGPLVLPWREQFLFVFSIVCQKLWSASIYTPNFNHAFDHFCIHSGGRAVIQAMERNLRLRKQDVEPSNMTLYRFGNTSSASIWYELSYIEAKGRMKRGDTVWQIAFGSGFKCNSAVWKCLCDVKPDTTSAWRDTIHNYPVDIVRTN* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2236 453 PANTHER 3-KETOACYL-COA SYNTHASE 21-RELATED 19 450 - -
Lja6g2236 453 CDD CHS_like 31 424 - -
Lja6g2236 453 SUPERFAMILY Thiolase-like 38 249 IPR016039 GO:0016746
Lja6g2236 453 PIRSF Very_long_ch_3-ktacl-CoA_syn 1 453 IPR012392 GO:0006633|GO:0016020|GO:0016747
Lja6g2236 453 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 344 425 IPR013747 -
Lja6g2236 453 PANTHER 3-KETOACYL-COA SYNTHASE 19 450 IPR012392 GO:0006633|GO:0016020|GO:0016747
Lja6g2236 453 Pfam FAE1/Type III polyketide synthase-like protein 43 330 IPR013601 GO:0006633|GO:0016020|GO:0016747
Lja6g2236 453 Gene3D - 69 425 IPR016039 GO:0016746
Lja6g2236 453 SUPERFAMILY Thiolase-like 258 426 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2236 Lja-Chr6 51321731 51323092 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2236 11 447 Acyl Lipid Metabolism Gene Families AT1G71160 50.336 3.81e-165 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2236 K15397 - gmx:100783404 728.398