Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2224 ATGCTGGGAACTCGGCGATTCCGTCAAATTCAAAGGTGGTGCCGCCGCAACACCCTCACCTTCCTCTGCCTCTTCCTCACCGTCCTCGTCCTCCGCGGCACCATCGGCACGCCGGAGCAAGACCTCAACGAGTTCCGCAACCACCTCTCCGCCGCCCGCACCCGTCGCGTACTAGAAGAAAAAACTCAACCCGACGGCGGCGACAATAACAACCACCACGCCACCTTCGACCTCTCGAAAATCCTCGTCGACGAAGACTCCGGCGACGACGAAAAGCGTGACACAAACGCAGCCTACACCCTCGGCCCAAAGATTTCAAACTGGGACGAGCAGCGGCGTGAGTGGCTCCGGAACAATCCGGGTCACCGGAGCTTCACCGGACCGAACAAGCCTCGGGTCCTTCTGGTAACTGGGTCGTCGCCCAAACCATGTGAGAATCCGGTGGGTGATCATTACCTTGTGAAGTCGATTAAGAACAAGATAGACTATTGCAGGGTTCATGGGATTGAGATTTTCTACAACATGGCTCTGTTGGATGCTGAAATGGCAGGGTTTTGGGCCAAGCTTCCTCTGATTCGGAAGCTTTTGCTGTCTCACCCTGATGTTGAGTTTCTATGGTGGATGGACAGTGATGCTATGTTCACTGACATGGCATTTGAGGTGCCTTGGGAAAGGTATAGGAATCACAACTTTGTGATGCATGGTTGGAATGAGATGGTGTATGATGAGAAGAATTGGATTGGTTTGAACACTGGGAGTTTTCTGTTGAGGAATTGTCAGTGGTCTTTGGACATTCTTGATGCTTGGGCACCAATGGGGCCTAAAGGGAAAATCAGGGATGAGGGTGGGAAACTGCTCACTAGGGAGCTGAAAAACAGGCCTGTTTTTGAAGCTGATGATCAATCTGCTATGGTTTATTTGTTGGCTACTGAGAGAGGGAAATGGGGTGATAAGGTTTACCTTGAGAATGGTTATTACTTGCATGGTTATTGGGGGATTTTGGTGGATCGTTATGAGGAGATGATTGAGAATTTTCACCCTGGTTTTGGGGATCATAGGTGGCCTTTGGTTACTCACTTTGTGGGTTGCAAGCCATGTGGTAAGTTTGGGGATTACCCTGTTGAGAGGTGCTTGAAACAGATGGACCGTGCTTACAATTTTGGGGACAACCAGATTTTGCAGATGTATGGGTTCACTCACAAGTCACTTGCTAGTCGCAGGGTGAAAAGAGTGAGGAATGACACTAGTAATCCTACTGATGTTACAGATGAGTTTGGGTTGCTTCATCCAGCTTTCAAAGCTATCAAGCTTCCACCCTCTTCTTCATGA 1329 0.4966 MLGTRRFRQIQRWCRRNTLTFLCLFLTVLVLRGTIGTPEQDLNEFRNHLSAARTRRVLEEKTQPDGGDNNNHHATFDLSKILVDEDSGDDEKRDTNAAYTLGPKISNWDEQRREWLRNNPGHRSFTGPNKPRVLLVTGSSPKPCENPVGDHYLVKSIKNKIDYCRVHGIEIFYNMALLDAEMAGFWAKLPLIRKLLLSHPDVEFLWWMDSDAMFTDMAFEVPWERYRNHNFVMHGWNEMVYDEKNWIGLNTGSFLLRNCQWSLDILDAWAPMGPKGKIRDEGGKLLTRELKNRPVFEADDQSAMVYLLATERGKWGDKVYLENGYYLHGYWGILVDRYEEMIENFHPGFGDHRWPLVTHFVGCKPCGKFGDYPVERCLKQMDRAYNFGDNQILQMYGFTHKSLASRRVKRVRNDTSNPTDVTDEFGLLHPAFKAIKLPPSSS* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2224 442 Pfam galactosyl transferase GMA12/MNN10 family 130 369 IPR008630 GO:0016021|GO:0016757
Lja6g2224 442 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 129 276 IPR029044 -
Lja6g2224 442 PANTHER XYLOGLUCAN 6-XYLOSYLTRANSFERASE 2-LIKE 14 441 - -
Lja6g2224 442 PANTHER XYLOGLUCAN 6-XYLOSYLTRANSFERASE 5-RELATED-RELATED 14 441 IPR008630 GO:0016021|GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2224 Lja-Chr6 51167098 51168426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2224 2 442 Glycosyltransferase AT3G62720 75.274 0.0 713
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2224 K08238 - gmx:100818287 789.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2224 6 51167098 51168426 Lja6g2224 6 51167098 51168426 ECH