Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2199 ATGGATCCAAATTTTGGTGCATCTTGTTCCAATGTCACGGAGGAAAATTTGAACCGTTACAGGCATTTTGTCAATGAAATTCTCACCAAAGTTCAAAGGCTTGAGAAGCAAGTTAATGAGGTTGAACAGTTCTACAATCCCACTGATGGTGTTCAAGTTAATCATTACAAAGGGAGGGGGATGCATCTTTCTGGCACCAAGAAGTCAATTTTACAAGGTGGATCAAGTAGGGAAGTTCTGGGAATGCAAGAGCTCATGCACCGGTTTGAAACAATATTGGATGAGATAACTCAGGATAGATGGGCTGAACCCTTCTTGGAACCTGTAGATGTTAAGGGTCTTGACTTGTATGACTATTATGAGATTATTGAGAAGCCTATGGATTTCAGCACAATAAGAAGAAAAATGGATGCCAAGGATGGCTCTGGTTATAAGAACGTGCGGGAGATATATTCTGATGTCCGGTTGATTTTTAAGAATGCAATGAAATATAATGACAGAAAACATGATATCCATGTTATGGCGAAGAACTTGCTGGAGAAATTTGAGAAGAAATGGCTGCAACTTTTGCCTAAAGTTGTTGAGGCGGAGAGTGAAAGATTAGCGGAAGAACGGTTGAATGCACACATTGCCCAAGAAGCCAATTGTGCCAATATGGCTAGGGAAATAAGCTTTGAGCTAGGTGAGGTTGACACAGATTTAAAGAATCTCAAAGCAATGGTGATTGAAAATTGCAGGAAACTGTCAGCTCAAGAGAAAGTAACGCTTGGGACAGCTCTCACCAAATTGTCTCATGAAAACCTCATGAGGGCAATGCAGATAATTTCTGAGAACAACCCAAACTTCCAGCCAGATGTTGAAGAGGTGAACCTTGACATTGATGCTCAGAGTGATTACACACTGTGGAGATTAAATATTTTTGCTAAAAGTGCACTAGAGGTTCAAGGAAGAACACATGCAGACACAGTTGCTAACCATAACAGTAATGTTGAGGAGGAGGAGAGAAGCAACAAAAGGAGGAGAGTTTAA 1029 0.4062 MDPNFGASCSNVTEENLNRYRHFVNEILTKVQRLEKQVNEVEQFYNPTDGVQVNHYKGRGMHLSGTKKSILQGGSSREVLGMQELMHRFETILDEITQDRWAEPFLEPVDVKGLDLYDYYEIIEKPMDFSTIRRKMDAKDGSGYKNVREIYSDVRLIFKNAMKYNDRKHDIHVMAKNLLEKFEKKWLQLLPKVVEAESERLAEERLNAHIAQEANCANMAREISFELGEVDTDLKNLKAMVIENCRKLSAQEKVTLGTALTKLSHENLMRAMQIISENNPNFQPDVEEVNLDIDAQSDYTLWRLNIFAKSALEVQGRTHADTVANHNSNVEEEERSNKRRRV* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2199 342 Pfam Bromodomain extra-terminal - transcription regulation 247 309 IPR027353 -
Lja6g2199 342 PANTHER OSJNBA0053K19.4 PROTEIN 7 340 - -
Lja6g2199 342 Coils Coil 24 44 - -
Lja6g2199 342 Gene3D - 65 208 IPR036427 GO:0005515
Lja6g2199 342 ProSiteProfiles NET domain profile. 238 319 IPR027353 -
Lja6g2199 342 ProSiteProfiles Bromodomain profile. 97 172 IPR001487 GO:0005515
Lja6g2199 342 SMART bromo_6 78 191 IPR001487 GO:0005515
Lja6g2199 342 MobiDBLite consensus disorder prediction 326 342 - -
Lja6g2199 342 SUPERFAMILY Bromodomain 65 195 IPR036427 GO:0005515
Lja6g2199 342 Gene3D - 242 317 IPR038336 -
Lja6g2199 342 Pfam Bromodomain 90 176 IPR001487 GO:0005515
Lja6g2199 342 MobiDBLite consensus disorder prediction 319 342 - -
Lja6g2199 342 PRINTS Bromodomain signature 153 172 IPR001487 GO:0005515
Lja6g2199 342 PRINTS Bromodomain signature 100 113 IPR001487 GO:0005515
Lja6g2199 342 PRINTS Bromodomain signature 116 132 IPR001487 GO:0005515
Lja6g2199 342 PANTHER TRANSCRIPTION FACTOR GTE1-LIKE ISOFORM X1 7 340 IPR017413 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2199 Lja-Chr6 50980416 50983553 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2199 - - lja:Lj0g3v0059669.1 675.241