Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2188 ATGCCTTCAACTCACTCTCCCATTTTCATTCCCCAAATTACCCTCATCGCTTTCCTCTATTTCCTAGTCCTATCCCCACGACCCTCCCTCTCATTCAACATCACCGCCCTCCTCTCCACCTTCCCGGAATTCTCCCAATTCACCGCCCTCATCGCCCCTCTCTCCGACGACCTCTCCCACCGCTCCTCCCTCTCCCTCCTCGCCGTCCCCAACTCCGTCCTCTCCTCCGACGACCGCCTCTCCCGCCACCAGCTCACCCCCTCCACCCTCCCCGACGTCCTCCGCTACCACGTCCTCCTTCAATACCTCTCCTGGTCCGACCTCCGCTCCCTCCCCCCCTCCGGCAAGCTCATCACCACTCTCTACCAAACCACCGGCCGCGCCACCGGTAACCTCGGCTCCGTCAACCTCACCTGCGACCCCGTCACCGGCCTCATCTCGATCCACCCCCCAACCCCATCCTCCTCCTCCTCCGCCGCCACAAACGCCACCGTTCTCTCCCTCGTGAAAACCCTCCCCTACAACGTCACCATTTTCTCCGTCAATGCTCTCCTCATCCCCGGCGGCTTCGACCTCATGGCCTCCGAGACCGGGCCCACTTCCTTCATCAACATCACCAAAGCCCTCATCGACGGCCACAACTTCAACGTCGTCGCGTCCCTCCTCTCCGCCTCCGGCGTCGTGGAGGAGTTCGAGAGCGACGAGGGCGGCGCCGGGATCACGTTGTTCGTCCCCGTCGACGACGCCTTCGCCGATCTCCCTGCCTCCATCTCCCTCCAGTCACTCCCGGCGGACAAGAAGGCCGTCGTGCTCCGATTCCATGTCCTCCATTCGTATTACCCTCTCGGGTCGCTGCAATCCATCACGAATCCATCGCAGCCCACGCTCGCCACCGAGGCCATGGGTGCTGGATTCTACACCCTCAACATCTCCGCCTTCAACGGCTCCCTTGCAATCAACTCCGGCATCGTTCAGGCCTCCGTCACTCAAACAGTTTTCGATGAGAAACCCGTTTCCATTTTCGGCATCTCCAGGGTCCTTCTACCCAAAGAGATTTTCGGGAAGAATCCGATCGTGTCTTCCAGGACCGCGCCTCAGGACGGTGCTCCTCCACCCGAAGAGGACGCGCATTCGCCGGAGACTTCACCGGGGTTGGATGGCAGCCCTTCACACCTTTCTTCGCCGCCGGGGCTCCGGGATGATGTGCTCTCAGAAGGTGTTGTTCATGGTTCGGAGTCATTTGTTGTTGTTGTTGTTCTATGCTGTATAGGATTGTATTTAGTGGTATAA 1290 0.6 MPSTHSPIFIPQITLIAFLYFLVLSPRPSLSFNITALLSTFPEFSQFTALIAPLSDDLSHRSSLSLLAVPNSVLSSDDRLSRHQLTPSTLPDVLRYHVLLQYLSWSDLRSLPPSGKLITTLYQTTGRATGNLGSVNLTCDPVTGLISIHPPTPSSSSSAATNATVLSLVKTLPYNVTIFSVNALLIPGGFDLMASETGPTSFINITKALIDGHNFNVVASLLSASGVVEEFESDEGGAGITLFVPVDDAFADLPASISLQSLPADKKAVVLRFHVLHSYYPLGSLQSITNPSQPTLATEAMGAGFYTLNISAFNGSLAINSGIVQASVTQTVFDEKPVSIFGISRVLLPKEIFGKNPIVSSRTAPQDGAPPPEEDAHSPETSPGLDGSPSHLSSPPGLRDDVLSEGVVHGSESFVVVVVLCCIGLYLVV* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2188 429 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 12 427 IPR033254 -
Lja6g2188 429 Gene3D FAS1 domain 27 187 IPR036378 -
Lja6g2188 429 Gene3D FAS1 domain 193 350 IPR036378 -
Lja6g2188 429 ProSiteProfiles FAS1/BIgH3 domain profile. 31 172 IPR000782 -
Lja6g2188 429 SMART fasc_3 66 188 IPR000782 -
Lja6g2188 429 SMART fasc_3 241 350 IPR000782 -
Lja6g2188 429 ProSiteProfiles FAS1/BIgH3 domain profile. 202 347 IPR000782 -
Lja6g2188 429 MobiDBLite consensus disorder prediction 358 396 - -
Lja6g2188 429 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 4 12 427 - -
Lja6g2188 429 Pfam Fasciclin domain 214 349 IPR000782 -
Lja6g2188 429 SUPERFAMILY FAS1 domain 209 350 IPR036378 -
Lja6g2188 429 SUPERFAMILY FAS1 domain 31 138 IPR036378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2188 Lja-Chr6 50884823 50886849 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2188 - - ccaj:109812902 542.732