Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2184 ATGCCACCGCCACCAGAGCTTCCAGGGTTCTACTATGACCCAGAGAAGAACAGGTACTTCCCCATCAAAGGTCCAATCCCTGGTTCTTCTTCTTCTTCAAAGCCTAAGACCAAAACCACTGACCTAAATTCATCACAACCCTCTTCCTCTAAGTTACAGCAGAAGAGTAGGAGTAGTTATTGTTGGAAGGTTAGGAACAGAACTACTTCTAATCTGCTTCAGGGTAGAGAGTTAGGTGGTCATCATGTTAGTGCCTCCCATTGCTTCAGTGAGGAGTTCAGGAAAATGCAAGCATCTCAACCCGCTGTGTGGAAGTACCAGGGAACTGATAAGATCGGTATTAGTGCTTTGGAGCACATGAAAGTTGATGTGAAGACGGCAGAGGGTCGAGTTGAAACTGATGTTTTATTGACTGGCAGCATAAATGGCACGCTGAGTTTTTGTGAAGTTGGAAGGGTTGGGCAAAATTTTGACAGTGGTGTAACGTGGATGCCAGATCATGTGAAGAATTATGTTGGAGGGAAAACAGATGAGCGTTATGAGGTGCCAGGGCCAGTTTCCAGACCTAATGGAGCTTCACTGATTATGTCCTCAAGAGTATCCTGTATAAGATTGGGTTCAAAGTGCTCTTCCACTGCTGTGAATGATGATCCTATTGTTGGACATGCGTTATTTACTACTTTGGGGTCAGAGACATCAGGTGGATCACTTTTTACTCTTGGTCTTGTTGAACCATTAGATCTTGGACCAAGAATACTGAACACATGGAGCAGACTGGAGGAAATTGCTTCCTTCAAGTGTACCCTTTGGACAGCAGAATATGATTATAATAGACATCGGGCTTCAATAGGTACTAATGTGGGAGGTGCTTTGGTGGATCTTGAAACTAGGAAGACGTCATGGTTTTTAACTTGTAAAAGTGATGTTTTTGCTCAGCAGATAGTTGATTCAGGAAATGTGATTTTATGTGGACTTAGAAATGGGGCCATTGTCACTGCAGATTTTCGTGCGAAAAGAGAGAGACATAAGCATTTGATATCTAATACATCTTCAAATAAGAAAGTTGGAAGTTCTAATAAAGAATGGTTCAAGCTCAATGGAAACATATATCCTTCTCATACCATTTGGATGCCTTCATCTATATCCAGCTTGGTGTCACTTCAGTTTGATGATCAGTACTTCTTGGCAAGCTCCATGGATGGATCGATAAGGCTCTATGATCGCCGCCTGCTCCAGAGGGGTGCTGTCCAATCTTATGAAGGGCATGTGAATTCTCATACATGTATACAGCTTGGTGTTGATCCATCTGAGAGATTTGTTATGTCAGGAGGGGAGGATTGCAAGCTACGGTTATGGAGCATCAAGTCTGGCGAGCTTCTTTTTGAAGATAAGTTCTCAGATTCAGTTCTCTCTACCGTGTGCTATCAAACATGCAAAAGGACTTTTAAAGCAGATGAAGGAAATCAATACAAGCAGGACTCTTCTTTGGGTGCATGGCTTGGATCACATGAAGGACTATTTTATATGCATTGGTTATGA 1539 0.4256 MPPPPELPGFYYDPEKNRYFPIKGPIPGSSSSSKPKTKTTDLNSSQPSSSKLQQKSRSSYCWKVRNRTTSNLLQGRELGGHHVSASHCFSEEFRKMQASQPAVWKYQGTDKIGISALEHMKVDVKTAEGRVETDVLLTGSINGTLSFCEVGRVGQNFDSGVTWMPDHVKNYVGGKTDERYEVPGPVSRPNGASLIMSSRVSCIRLGSKCSSTAVNDDPIVGHALFTTLGSETSGGSLFTLGLVEPLDLGPRILNTWSRLEEIASFKCTLWTAEYDYNRHRASIGTNVGGALVDLETRKTSWFLTCKSDVFAQQIVDSGNVILCGLRNGAIVTADFRAKRERHKHLISNTSSNKKVGSSNKEWFKLNGNIYPSHTIWMPSSISSLVSLQFDDQYFLASSMDGSIRLYDRRLLQRGAVQSYEGHVNSHTCIQLGVDPSERFVMSGGEDCKLRLWSIKSGELLFEDKFSDSVLSTVCYQTCKRTFKADEGNQYKQDSSLGAWLGSHEGLFYMHWL* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2184 512 MobiDBLite consensus disorder prediction 26 57 - -
Lja6g2184 512 PANTHER KATANIN P80 SUBUNIT 12 510 - -
Lja6g2184 512 SMART WD40_4 368 407 IPR001680 GO:0005515
Lja6g2184 512 SMART WD40_4 412 453 IPR001680 GO:0005515
Lja6g2184 512 SUPERFAMILY WD40 repeat-like 291 474 IPR036322 GO:0005515
Lja6g2184 512 Gene3D - 252 499 IPR015943 GO:0005515
Lja6g2184 512 MobiDBLite consensus disorder prediction 18 57 - -
Lja6g2184 512 ProSiteProfiles Trp-Asp (WD) repeats profile. 419 462 IPR001680 GO:0005515
Lja6g2184 512 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 12 510 - -
Lja6g2184 512 Pfam WD domain, G-beta repeat 381 407 IPR001680 GO:0005515
Lja6g2184 512 Pfam WD domain, G-beta repeat 416 453 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2184 382 464 Miscellaneous Gene Families AT5G08390 30.588 2.62e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2184 K11799 - gmx:100798753 716.842