Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2181 ATGGCTTTTCCCCTCTTCACCTTGCTCTTCTTCCTTCTGAGCTCAGTTCATGGCCGCTTTGTGGTGGAGAAGAACAGCATCACCGTTCTGTCTCCCCACAAGCTCAGGGCCAAGCGTGATGGCGCCATAGGAAACTTTGGCCTTCCTAACTATGGAGGATACATCATAGGGTCACTTGTTTATCCAGACAAAGACTCTCATGGGTGCCACGAATTTGAGGGTGATAAGCCTTTCAAGTTTCGCTCTAATCGCCCTACGATTGTTCTCATTGATCGTGGAGAGTGTTACTTTGCCTTGAAGGTGTGGCATGCCCAACTAGCGGGAGCTGCAGCAGTTTTAGTGACTGATAGCATAGAGGAGTCCCTAATAACCATGGATTCTCCTGAGGAGAGCCTTGATGCTGACGGCTACATAGAGAAGATTGTGATTCCATCAGCTCTGATAGAGAAGTCCTTTGGTGATGCTTTGAAGGAAGCTTTAAACAACAAAGATGAAGTTTTGCTAAGAATAGACTGGAGAGAGTCAATGCCTCACCCTGATGACAGGGTTGAGTATGAGTTCTGGACTAACAGTAATGACGAATGTGGAGCTCGCTGCGATGAGCAGATGAATTTTGTGAAGAATTTCAAGGGTCATGCTCAGATTCTTGAGAGGGGTGGTTATACCTTATTTACTCCACACTATATTACTTGGTTTTGTCCAAGGCCTTTTGTTCAAAGCAGTCAGTGTAAGTCCCAATGTATAAACAATGGAAGATATTGTGCGCCGGATCCGGAGAAGGATTTTGGAGAGGGATATCAAGGGAAGGATGTGGTGTATGAGAATCTGAGGCAGCTTTGTGTCCATAGAGTTGCGAACGAGAGCAGCCGTTCGTGGGTCTGGTGGGATTATGTGACAGATTTCCATGTCCGGTGTTCTATGAAGGAGAAAAGATACAGCAAAGAATGTGCTGAAACTGTCATGGAATCATTAGATCTTCCAATTGAGAAAATTAAGAAATGCATGGGTGACCCTGAAGCAGATGTTGAGAATGAAGTGTTAAAGAATGAGCAACAAGTCCAGGTTGGGAGAGGATCTCGTGGTGATGTCACTATCTTGCCAACATTGGTTATAAATAATGTCCAATATAGAGGAAAATTGGAGAGAACTTCTGTCCTGAAGGCTGTATGTGCAGGATTTAAGGAGAGTACTGAACCTCCAGTTTGTTTAAGTGGAGATATTGAGACTAATGAGTGCCTTGAAAGAAATGGAGGCTGCTGGCAAGACAAAAATGCTAGCATAAGTGCTTGCAAGGATACTTTCAGGGGAAGAGTTTGTGAGTGCCCTGTCGTGAATGGTGTTCAGTATAGAGGTGATGGTTATGCATCATGTGAAGCTTTTGGACCTGCAAGGTGTTCTCTAAACCATGGAGGTTGTTGGTCCGAAACTAGAGATAAATTAGCTTTCTCAGCTTGCTCAGAATCAGTGGTAAATGGCTGTAAGTGTCCAGTTGGGTTTCGCGGAGACGGTATTAATAAATGTGAAGATGTTGATGAATGTAAGGAAAAAAGTGCATGTCAGTGTGATGGCTGCAGCTGCAAGAACACTTGGGGCGGTTACGATTGTAAGTGCAAAGGAGATCTTCTATACATAAAGGACCAAGATACTTGTATTGAAAGAAGTGGATCGAAATCTGGACGGTTTCTTGCCTTTGTGGTCATAGCAGTTGTTGTGGTGGCTGGTCTAGCTGGCTACATATTCTACAAATACAGGCTCAGGACTTACATGGACTCAGAGATCATGGCTATCATGTCGCAATACATGCCACTGGACCAGCAAAATAATGTAGTTCATGCTGAAGCTCAGCCTTTACGACAAGGCGAGGTATAA 1869 0.443 MAFPLFTLLFFLLSSVHGRFVVEKNSITVLSPHKLRAKRDGAIGNFGLPNYGGYIIGSLVYPDKDSHGCHEFEGDKPFKFRSNRPTIVLIDRGECYFALKVWHAQLAGAAAVLVTDSIEESLITMDSPEESLDADGYIEKIVIPSALIEKSFGDALKEALNNKDEVLLRIDWRESMPHPDDRVEYEFWTNSNDECGARCDEQMNFVKNFKGHAQILERGGYTLFTPHYITWFCPRPFVQSSQCKSQCINNGRYCAPDPEKDFGEGYQGKDVVYENLRQLCVHRVANESSRSWVWWDYVTDFHVRCSMKEKRYSKECAETVMESLDLPIEKIKKCMGDPEADVENEVLKNEQQVQVGRGSRGDVTILPTLVINNVQYRGKLERTSVLKAVCAGFKESTEPPVCLSGDIETNECLERNGGCWQDKNASISACKDTFRGRVCECPVVNGVQYRGDGYASCEAFGPARCSLNHGGCWSETRDKLAFSACSESVVNGCKCPVGFRGDGINKCEDVDECKEKSACQCDGCSCKNTWGGYDCKCKGDLLYIKDQDTCIERSGSKSGRFLAFVVIAVVVVAGLAGYIFYKYRLRTYMDSEIMAIMSQYMPLDQQNNVVHAEAQPLRQGEV* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2181 622 Pfam PA domain 57 156 IPR003137 -
Lja6g2181 622 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 8 599 - -
Lja6g2181 622 ProSitePatterns Calcium-binding EGF-like domain signature. 509 535 IPR018097 GO:0005509
Lja6g2181 622 Gene3D Laminin 463 551 - -
Lja6g2181 622 SMART egfca_6 509 551 IPR001881 GO:0005509
Lja6g2181 622 CDD EGF_CA 509 538 - -
Lja6g2181 622 SUPERFAMILY PA domain 86 166 IPR046450 -
Lja6g2181 622 Gene3D - 17 179 - -
Lja6g2181 622 PANTHER EGF-LIKE CALCIUM-BINDING DOMAIN, PA DOMAIN-CONTAINING PROTEIN-RELATED 8 599 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2181 Lja-Chr6 50810105 50815213 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2181 2 609 Miscellaneous Gene Families AT1G30900 70.888 0.0 952
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2181 - - gmx:100790467 1149.42