Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2171 ATGAGTTCCGCCACCACTATCTTCTTCAACCATTCATGCATCTTGTTACTGTGTCTGCTGTCAACACCTTCATGGACTTCTTCGTTTTCTGGTAGTGAAACTGGAGATTTAGAAAAAAGGGGTGATTTGTTTCCGCAGATTCTAAGAGATGAGGCAGTGGCAAGACTTCATGAGCTTGGGAAGGTGAGCGATGCTAGTGGCTATCTGGAGAGGACATTTTTGAGTCCTGCATCCTTGAGGGCGATTCATCTTATTCAAAAATGGATGGAGGATGCTGGTTTGAGAACTTGGGTGGACCAAATGGGAAACGTACATGGCCGAGTCGAGGGTCCGAATGCAAATGCTGAAGCTTTATTGCTTGGATCTCACATGGACACTGTTGTTGATGCTGGGAAGTTTGATGGATCACTGGGAATAATCTCTGCCATTTCTGCGTTGAAGGTTATGCATGATAATGGAAAGCTGCAAAAGTTAAGGCGCCCTGTTGAGGTGATTGCATTTTGCGATGAAGAGGGCGTCAGATTTCAATCTACTTTCTTGGGCAGCGGTGCCATAGCTGGTATTTTGCCTGCCACAACATTGGAGATACCGGATAAAAGGAATGCAACAGTAAGAGAAATTCTTAAGGAGAGCTCAATAGAAACCACAGAGGAAAGTTTTTTACAGCTCAAATATGACCCAAAATCTGTTTGGGGTTATGTTGAGGTCCACATTGAACAGGGTCCTGTGCTAGAACAAGTTGGTTTTCCACTTGGTGTGGTTAAAGGCATAGCTGGACAGACACGATTGAAGGTCACAGTCAGAGGCTCCCAAGGTCATGCTGGAACTGTTCCAATGTCCATGCGTCAGGATCCTATGGTGGCCGCTGCTGAACAAATTGTACTTATGGAAAGCCTCTGTAAACATCCTGAAGAATACCTTTCTTATGATGGTCGTTGCAGTGATTCATCGGTGAAATCACTTTCGAGTTCGCTTGTTTGTACCGTTGGAGAGATATCAACATGGCCAAGTGCCAGCAATGTCATTCCAGGCCAGGTTACATATACCATGGATATTCGAGCAATTGATGACCTCGGGCGTGAGGCTGTTATCTATGATTTATCCAACCGAATCTATCAAATATGTGATAGGCGTTCAGTTTCCTGCATAATTGAACACAAGCATAATGCAGGTGCTGTGATTTGTGATTCCGGACTGAGTTCACAGCTCAAGTCTGCAGCTTATTCTGCACTCAAGAGGATGGAGGGTGACATTCAAGAAGAAGTACCAACATTAATGAGTGGTGCAGGGCATGATGCAATGGCAATGTCTCACCTAACAAAGGTGGGAATGCTGTTTGTGCGGTGTCGCGGAGGCATAAGTCACTCTCCAGAAGAGCATGTGCTGGACAATGATGTTTGGGCGGCTGGTCTAGCAACCTTATCATTTCTGGAAAACCTGCAATAA 1446 0.4516 MSSATTIFFNHSCILLLCLLSTPSWTSSFSGSETGDLEKRGDLFPQILRDEAVARLHELGKVSDASGYLERTFLSPASLRAIHLIQKWMEDAGLRTWVDQMGNVHGRVEGPNANAEALLLGSHMDTVVDAGKFDGSLGIISAISALKVMHDNGKLQKLRRPVEVIAFCDEEGVRFQSTFLGSGAIAGILPATTLEIPDKRNATVREILKESSIETTEESFLQLKYDPKSVWGYVEVHIEQGPVLEQVGFPLGVVKGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMVAAAEQIVLMESLCKHPEEYLSYDGRCSDSSVKSLSSSLVCTVGEISTWPSASNVIPGQVTYTMDIRAIDDLGREAVIYDLSNRIYQICDRRSVSCIIEHKHNAGAVICDSGLSSQLKSAAYSALKRMEGDIQEEVPTLMSGAGHDAMAMSHLTKVGMLFVRCRGGISHSPEEHVLDNDVWAAGLATLSFLENLQ* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2171 481 CDD M20_bAS 53 478 - -
Lja6g2171 481 SUPERFAMILY Bacterial exopeptidase dimerisation domain 259 391 IPR036264 -
Lja6g2171 481 Gene3D Zn peptidases 63 470 - -
Lja6g2171 481 Gene3D - 259 391 - -
Lja6g2171 481 ProSitePatterns ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 118 127 IPR001261 -
Lja6g2171 481 SUPERFAMILY Zn-dependent exopeptidases 44 480 - -
Lja6g2171 481 Pfam Peptidase family M20/M25/M40 119 469 IPR002933 GO:0016787
Lja6g2171 481 TIGRFAM hydantase: amidase, hydantoinase/carbamoylase family 52 473 IPR010158 GO:0016813
Lja6g2171 481 PANTHER ALLANTOATE DEIMINASE-RELATED 41 474 IPR010158 GO:0016813
Lja6g2171 481 Pfam Peptidase dimerisation domain 259 369 IPR011650 -
Lja6g2171 481 PANTHER ALLANTOATE DEIMINASE-RELATED 41 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2171 Lja-Chr6 50750529 50755777 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2171 K02083 - gmx:100819399 828.55