Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2170 ATGGCAAGAAAACCTTCTCTGGTCTTGTCCTTGTTTCTGTGGGTGTCTTGTTTCATTGTGATTGGTGCTTATGGGGAGAAGAACTTGCCTCATATGACAATTTCTGGTGGCAAACATCATGTAGCAATACAAAGACTTCAGTCATTTAAGGCCTCTCTAACTAGACATGATTCCATTGCTTCAGCACCATCTTCATTCTCAGCCTCTTCTAGCCCTTCTCCTTCTCCATCTCCTCAGCCATTTCAGGGTGTGAACAATCCAAGGGTGTACCATGTGACATCTTATGGGGCAGACCCTTCAGGCAATTCAGACAGCACTGAAGCACTCCTTGCAGCCATAGCAGATGCAGCCAAGGGTCCAAGTGAAGGACGTTTGATAGAAGGTATCAAAAACCTTGGAGGTGCACAGGTTAATCTTGAGGGTGGAAATTACCTGATCAGCAAGTCACTGCAGTTACCGGTAGCTGGGGTGGGGAACCTCATGATACATGGGGGAACCATAAGAGCCTCAAATAATTTTCCAGCAGATGGCTATATCATTGATTTGTCAGCATCACCTTCATCATCCTACAATTTTGAGTACATAACTCTCAAGGACCTATTGTTGGACTCTAACTTCAGGGGAGGAGGCATTTCAGTCATAAACTCACTAAGAACAAGCATAGACAACTGTTACATCACACATTTCACCACCAATGGAATTTTAGTACAAAGTGGCCATGAAACCTACATCAGGAACTCCTTCCTTGGCCAACACATAACTGCCGGTGGCGATAAACATGAAAGGAACTTCTCAGGAACTGGAATAAACATCCAAGGTAATGATAATGCTGTCACAGATGTTGTAATTTTCTCAGCTGCTATAGGAATAATGGTTACTGGTCAAGCCAACACTTTTTCTGGTGTGCATTGTTACAATAAGGCCACTGGCTTTGGAGGTACTGGAATTTATTTGAAACTTCCCGGTTTGACGCAAACCCGGATCGTGAATTCTTACATGGATTACACCAGTATTGTTGCCGAAGACCCGGTTCAACTCCATATCTCTAGCAGTTTCTTCCTTGGTGATGCCAATATTGTTCTGAAATCTATGAAGGGGGTTGTGAATGGTGTTACTATTGTTGATAACATGTTCTCAGGCTCAAACAAGGAAGTTGAAATTGTTCATCTGGACCAATCAAATAGTGGTTTCAATCAAGTTGATCAGGTTATTGTTAACAGGAACATTGTGAGAGGAATGAAATTAAAGGCCACAGTTGCGAAAAAGTCTATGCAAGGGAATGGAACCTCATGGAGTGTTGATTTTAACGATGTTCTTCTTTTCCCTAACCTTATAAAAAATGTTCAGTACTCTTTAAGCTCCACAGGCAGTACCTTTCCAAACCATGCTCTCAGGAATGTGTCCGAGAATCGCGTTGTGATTGAAACAAATGAAGCAGTATCTGCAAATGTTTTTATCACTGTGGATCAAAGCATGGCAAGTTGA 1485 0.4229 MARKPSLVLSLFLWVSCFIVIGAYGEKNLPHMTISGGKHHVAIQRLQSFKASLTRHDSIASAPSSFSASSSPSPSPSPQPFQGVNNPRVYHVTSYGADPSGNSDSTEALLAAIADAAKGPSEGRLIEGIKNLGGAQVNLEGGNYLISKSLQLPVAGVGNLMIHGGTIRASNNFPADGYIIDLSASPSSSYNFEYITLKDLLLDSNFRGGGISVINSLRTSIDNCYITHFTTNGILVQSGHETYIRNSFLGQHITAGGDKHERNFSGTGINIQGNDNAVTDVVIFSAAIGIMVTGQANTFSGVHCYNKATGFGGTGIYLKLPGLTQTRIVNSYMDYTSIVAEDPVQLHISSSFFLGDANIVLKSMKGVVNGVTIVDNMFSGSNKEVEIVHLDQSNSGFNQVDQVIVNRNIVRGMKLKATVAKKSMQGNGTSWSVDFNDVLLFPNLIKNVQYSLSSTGSTFPNHALRNVSENRVVIETNEAVSANVFITVDQSMAS* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2170 494 SUPERFAMILY Pectin lyase-like 86 451 IPR011050 -
Lja6g2170 494 Pfam Pectate lyase superfamily protein 92 310 IPR024535 -
Lja6g2170 494 MobiDBLite consensus disorder prediction 62 84 - -
Lja6g2170 494 PANTHER POLYGALACTURONASE QRT3-LIKE PROTEIN 8 494 - -
Lja6g2170 494 Gene3D - 89 494 IPR012334 -
Lja6g2170 494 PANTHER POLYGALACTURONASE QRT3 8 494 IPR039279 GO:0004650
Lja6g2170 494 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2170 Lja-Chr6 50735779 50738077 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2170 - - gmx:100804107 782.711