Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2169 ATGGCCTCAAACTCCATGGCTGGCTTCATCACTGGTTCTCATTCTCATTCCCAACTCTCACTTGATTCTGATGAGCATCAGCCTCCTCCTCCTTCTCATCAACCTTCATCGAAAACATGTCGAGTTTGTGGTGATGAGGTTGGAATTAAGGAAGATGGGGAGCTTTTTGTGGCTTGTCATGTGTGTGGATTTCCTGTTTGCCGACCTTGTTATGAGTATGAGAGGAGTGAAGGGAACCAGTGCTGCCCTCAATGCAGCACTCGCTATAAGCGTCACAAAGGTTGTCCTAGAGTGGCTGGAGATGAAGAGGATAACTTTGATGCAGATGATTTTGAGGATGAATTTCAGCTTAAGAATCGTCATGATGATCTAGATCAGCACCGTGATGGAAGTCATGTGGAAAATGGGGACTACAATCAACAGAAATTGCATTCCAATGGCCAAGTTTTCTCTTCAGCAGGAAGTGTCACTGGCAAGGATTTTGAAGGGGAGAAAGATCTCAACAGTAATGCAGAATGGCAAGAAAGAGTAGAGAAATGGAAAGTCAGGCAAGAAAAGAAAGGTCTACTAAACAAAGAGGAGGGGAAAGAAGATCCAGGTGAAGATGATGATTATCTTTTGGCTGAAGCTAGGCAACCACTGTGGCGAAAGGTTCCAATATCTTCAAGCTTAATCAATCCATACCGCATAGTAATTGTGATGAGGCTGGTTATCCTAGCTTTCTTCTTTCGATTCCGTATCTTAACACCAGCATATGATGCATATCCCTTGTGGCTTATCTCTGTGATATGTGAGATATGGTTTGCACTGTCATGGATACTTGATCAGTTCCCCAAGTGGCTCCCCATCACCCGCGAAACTTACCTGGACCGTTTGTCCATAAGGTTTGAGCGCGAAGGCGAGCCAAACCAGCTTTCCCCAGTTGATGTCTATGTGAGTACTGTGGACCCTTTGAAGGAACCACCAATTATAACAGCAAACACTGTTCTGTCAATCCTCTCTGTTGATTACCCTGTGGACAAGGTCAGCTGCTATGTCTCAGATGATGGTGCTTCAATGCTTCTGTTTGATTCACTGGCAGAAACTGCTGAGTTTGCAAGAAGATGGGTTCCTTTTTCCAAGAAGTATAACATAGAGCCAAGGGCTCCTGAGTACTACTTCTCTGAGAAAATTGATTACTTGAAGGATAAGGTGCAGCCTACATTTGTGAAGGAAAGAAGGGCTATGAAGAGAGAATATGAAGAATTTAAGGTGAAGATTAATGCTTTGGTGGCAAAGGCTCTGAAGAAACCAGAGGAGGGGTGGGTTATGCAGGATGGAACTCCATGGCCTGGTAACAATACTCGTGATCATCCAGGAATGATTCAGGTATATTTAGGAAGTGCTGGTGCATTAGACGTGGAAGGCAAGGAACTGCCCCGACTTGTGTATATTTCGCGTGAGAAACGTCCTGGATATCCACATCACAAAAAAGCTGGTGCCATGAATGCTTTGGTTCGAGTTTCTGCTGTGCTTACAAATGCACCATTCATGTTGAATCTGGATTGTGACCACTACATCAATAATAGCAAGGCCATAAGAGAGGCTATGTGCTTTTTAATGGATCCCCAGCTTGGGAAGAAGCTCTGCTATGTCCAATTTCCACAAAGATTTGATGGGATTGATCGCCATGATAGATATGCTAACCGCAACACTGTGTTCTTTGATATCAATATGAAAGGGCTTGATGGGATTCAAGGTCCAGTGTATGTTGGTACTGGAACTGTGTTCAACAGGCAGGCATTATATGGCTATGATCCACCAGTGTCTGAGAAAAGACCAAAGATGACATGTGACTGCTGGCCATCATGGTGTTGCTTCTGTTGTGGTGGTTCAAGGAAGTCCAAGTCAAAAAAGAAATCAGGAAGAAAAGGTCTCTTCAGTGGATTGTACACCAAGAAGAAGAAAATGATGGGGAAAGATTATGTTAGGAAAGGGTCTGGTACCATGTTTGATCTTGAAGAGATTGAAGAAGGGCTTGAAGGCTATGAGGAGCTAGAGAAATCAACCCTCATGTCTCAGAAAAATTTCGAGAAGCGATTCGGTCAATCACCGGTTTTCATTGCTTCCACTTTGGTGGAAAATGGAGGACTTCCTGAAGGCACAAATACTCAATCACTAGTCAAGGAAGCTATTCATGTTATAAGCTGTGGCTATGAGGAGAAAACTGAATGGGGAAAAGAGATTGGATGGATTTATGGTTCGGTCACAGAAGATATTTTGACTGGATTTAAGATGCACTGCAGAGGATGGAAATCAGTGTATTGCATGCCAAAGAGACCAGCTTTCAAGGGATCTGCTCCAATAAATCTATCAGATCGGTTGCACCAAGTTCTGAGATGGGCCCTTGGTTCTATTGAGATTTTCCTCAGTCGTCATTGTCCATTGTGGTATGGCTATGCAGGGAAGCTCAAGTACCTAGAGAGGATGGCTTACATTAACACCATTGTTTATCCATTCACTTCCATCCCTCTCCTTGCATACTGCACAATTCCAGCTGTGTGTCTCCTCACTGGAAAATTCATCATCCCCACACTGACAAACCTTGCTAGTGTTTGGTTCATGGCTCTATTTATCTCCATCATCTTGACCGGTGTGCTTGAGCTCCGGTGGAGTGGGGTTTTGATTGAAGACTGGTGGCGCAATGAGCAATTCTGGGTCATTGGAGGTGTTTCTGCTCATCTTTTTGCTGTGTTTCAAGGTCTCCTCAAAGTCCTTGCTGGAGTAGACACCAATTTCACAGTCACAGCAAAAGCAGCAGAAGATGCTGAATTTGGAGAGCTCTATCTCTTCAAGTGGACCACTCTTCTCATCCCACCAACCACTCTTATTATCTTGAACATTGTAGGAGTTGTTGCTGGAGTCTCTGATGCTATTAACAATGGTTATGGCTCATGGGGACCTTTATTTGGGAAGCTATTTTTTGCCTTCTGGGTCATTGTTCATTTATATCCTTTCCTCAAAGGTCTCATGGGAAAGCAAAACAGGACTCCTACCATTGTGGTCCTGTGGTCAATCCTCTTGGCCTCAATTTTCTCATTGATTTGGGTCAGGATTGATCCTTTCTTGCCCAAGCAAACTGGTCCAGTTCTCAAACAATGTGGGGTGGAATGCTGA 3156 0.4395 MASNSMAGFITGSHSHSQLSLDSDEHQPPPPSHQPSSKTCRVCGDEVGIKEDGELFVACHVCGFPVCRPCYEYERSEGNQCCPQCSTRYKRHKGCPRVAGDEEDNFDADDFEDEFQLKNRHDDLDQHRDGSHVENGDYNQQKLHSNGQVFSSAGSVTGKDFEGEKDLNSNAEWQERVEKWKVRQEKKGLLNKEEGKEDPGEDDDYLLAEARQPLWRKVPISSSLINPYRIVIVMRLVILAFFFRFRILTPAYDAYPLWLISVICEIWFALSWILDQFPKWLPITRETYLDRLSIRFEREGEPNQLSPVDVYVSTVDPLKEPPIITANTVLSILSVDYPVDKVSCYVSDDGASMLLFDSLAETAEFARRWVPFSKKYNIEPRAPEYYFSEKIDYLKDKVQPTFVKERRAMKREYEEFKVKINALVAKALKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSAGALDVEGKELPRLVYISREKRPGYPHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAIREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNTVFFDINMKGLDGIQGPVYVGTGTVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCFCCGGSRKSKSKKKSGRKGLFSGLYTKKKKMMGKDYVRKGSGTMFDLEEIEEGLEGYEELEKSTLMSQKNFEKRFGQSPVFIASTLVENGGLPEGTNTQSLVKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSIEIFLSRHCPLWYGYAGKLKYLERMAYINTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTLTNLASVWFMALFISIILTGVLELRWSGVLIEDWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGVDTNFTVTAKAAEDAEFGELYLFKWTTLLIPPTTLIILNIVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGKQNRTPTIVVLWSILLASIFSLIWVRIDPFLPKQTGPVLKQCGVEC* 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2169 1051 MobiDBLite consensus disorder prediction 1 40 - -
Lja6g2169 1051 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 414 599 IPR029044 -
Lja6g2169 1051 Pfam Zinc-binding RING-finger 32 105 IPR027934 -
Lja6g2169 1051 SUPERFAMILY RING/U-box 26 106 - -
Lja6g2169 1051 MobiDBLite consensus disorder prediction 1 27 - -
Lja6g2169 1051 Coils Coil 406 426 - -
Lja6g2169 1051 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 113 IPR013083 -
Lja6g2169 1051 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 3 [UDP-FORMING]-RELATED 26 125 - -
Lja6g2169 1051 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 3 [UDP-FORMING]-RELATED 165 1051 - -
Lja6g2169 1051 CDD mRING-HC-C4C4_CesA_plant 38 88 - -
Lja6g2169 1051 Pfam Cellulose synthase 308 1044 IPR005150 GO:0016020|GO:0016760|GO:0030244
Lja6g2169 1051 SUPERFAMILY Nucleotide-diphospho-sugar transferases 321 855 IPR029044 -
Lja6g2169 1051 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 26 125 - -
Lja6g2169 1051 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 165 1051 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2169 Lja-Chr6 50727738 50733603 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2169 21 1051 Glycosyltransferase AT5G05170 65.406 0.0 1442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2169 K10999 - gmx:100781996 1905.57