Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2168 ATGTTATCATCACTGCCTAAAACCATGATTAGTTTCTCAATGATCTTAGCATTTCTCTTATCAATGGTGGTACAAGATTCAACTTGCCTCAGTGAAGAACACATAGACCTGTCTCATTTCAGGAACAAACTTATAAGGCACAGAGTGGGAATTCCCTTGTCCCAAGCACCTTTTACATCAGCACCTTCACCTTCAGAGACAGCAAGGAGAGGCAGAGTGGTGAACCCAATTGGGTATGGTGCAGATCCTACAGGGGCAGATGACAGCAGTGATGCTATTCTGAAAGCTATAGCAGAAGGTTTTGCAATAGGGAGGAGTGATGAGTTTCATGAGCTGGTGGCAGGAGTGAGAGACCTTGGAGGGGTTGTGATTGATTTGCAAGGTGGAAACTACAAAATCAGCAAACCCATCACTTTTCCTTCCTATGTAGGCAATGTTGTGGTACAAGGAGGAACCTTAAGAGCTTCTGATAAATTTCCTCCTGATCGCCATCTTGTTGAGTTATCAGCATCAAATTCCCATAACCTCCAAGAACCGGCAGCATCCATCCACCGCCATCATCATCATGGTTTCAACAGCAAGAAACTTCAGCAAAACATAGGGATTTACTATGAAGACATAACATTTCGTGACATCTTCTTCGATTCGAGCTACAGGGGAGGAGGGATCCTCATTGTTGATTCTGCTAGAGTAAGAATCACCAACTGCTTCTTCCTCCACTTCACCACAGAAGGGATTCAAGTTCAACGCGGTCACGAGACCTACATATCAAGCACTTTCCTCGGGCAACACTCAACAGTTGGTGGAGATAAAGGGGAGAGAGAATTCTCAGGCACTGCCATTGATCTTGCTAGCAATGACAACGCAATCACTGATGTGTCAATTTTCTCTGCTGCCATTGGGATTGTGTTAAGGGGACAAGCCAACATGATCACAGGGGTGCACTGTTACAACAAGGCAACAGCCTTTGGTGGCATTGGGATTTTGGTGAAATTAGCAGGGTATTCACAAACCAGAATTGACAATTATCCTGTTCAAGTTCATGTTACCAATGGATTCTTCTTAGGGGGTGCTAATATTGTTTTGAAGTCCATTAAGGGAAAAGTTTCTGGTTTAAACATTGTAGATAACATGTTCAGTGGGAAGTGGAACCAGGTACCGATTGTTGCTCTTGATGGGCAATTCAGTAGCATTGACCAAGTGGTGATTGATAGGAACAATGTGTATGGTAGCATGAGTTTGAGATCAACGGTTTCCAAGTTGACTGTGGCTGGAAATGGCTCAAAATGGGTGGCTGATTTTTCAAATGTTTTGGTGTTTCCTAATCGGATTAGTCATTTTCAGTATTCATTTTACTCTCAGGGGGAGCCTAAGTTCTTGGCACATTCAGTGACCAATGTGTCAAATAATGTTGTGGTGGTGGAAAGTGAGAAACAAGTTCAAGGGGTTGTTTCATTCTTTATTGAACAATGA 1473 0.4304 MLSSLPKTMISFSMILAFLLSMVVQDSTCLSEEHIDLSHFRNKLIRHRVGIPLSQAPFTSAPSPSETARRGRVVNPIGYGADPTGADDSSDAILKAIAEGFAIGRSDEFHELVAGVRDLGGVVIDLQGGNYKISKPITFPSYVGNVVVQGGTLRASDKFPPDRHLVELSASNSHNLQEPAASIHRHHHHGFNSKKLQQNIGIYYEDITFRDIFFDSSYRGGGILIVDSARVRITNCFFLHFTTEGIQVQRGHETYISSTFLGQHSTVGGDKGEREFSGTAIDLASNDNAITDVSIFSAAIGIVLRGQANMITGVHCYNKATAFGGIGILVKLAGYSQTRIDNYPVQVHVTNGFFLGGANIVLKSIKGKVSGLNIVDNMFSGKWNQVPIVALDGQFSSIDQVVIDRNNVYGSMSLRSTVSKLTVAGNGSKWVADFSNVLVFPNRISHFQYSFYSQGEPKFLAHSVTNVSNNVVVVESEKQVQGVVSFFIEQ* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2168 490 Gene3D - 73 484 IPR012334 -
Lja6g2168 490 PANTHER POLYGALACTURONASE QRT3 14 490 IPR039279 GO:0004650
Lja6g2168 490 PANTHER POLYGALACTURONASE QRT3-LIKE PROTEIN 14 490 - -
Lja6g2168 490 SUPERFAMILY Pectin lyase-like 70 443 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2168 Lja-Chr6 50722776 50726787 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2168 - - gmx:100802482 624.394