Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2152 ATGGCGGCGGCATCATTGTCATGTCTTGTTGGGAGTAGTTTATCTACGCCGAGTAATAAATTAACTCTTGCCAAGGGTGTAAATGGGAGACAACTCTTCTTATTTCAGAGACTTTCATCATTGAGTATGGAGTCAAAAACAGTGCTTGTAAAGGCATCCTTGGATCAAAGGAAACATGAAGGGAGAAGAAAGTTTCTGAAACTGTTGAATGTGGGAGTTGGCTTACCTGCATTATTAGGAAATGGGAAAGCTTATGCGGATGAGCAGGGGATTTCTCCCTCCAAAATGTCTTATTCTCAGTTTCTTGAGTATTTGGATAAGGATAGAGTTAAAAAAGTGGATCTGTTTGAGAATGGAACTATAGCTATTGTAGAGGCTCTTTCTCTTGATAATAGGGCGCTGCGAATGCGAGTTCAACTTCCTGGACTTAGCCAAGAGCTCCTTCAGAAACTCAGGGAAAAGAACATTGACTTTGCAGCTCATAATGCCCAAGAAGAGTCGGATTCTCTGTTATTTAACCTGATTGGGAATCTGGCTTTCCCTCTAATCTTGATTGGAGGATTGTTCCTTTTGTCAAGACGATCATCAGGAGGGATGGGAGGTCCTGGTGGGCCTGGCTTTCCTCTTGCTTTTGGTCAGTCTAAAGCCAAATTTCAAATGGAACCAAATACTGGTGTGACATTTGATGATGTTGCCGGGGTAGATGAAGCCAAGCAGGATTTTATGGAGGTGGTGGAGTTTCTGAAGAAGCCTGAGAGGTTCACTGCTGTTGGAGCTCGCATACCAAAAGGAGTTCTTCTTATTGGTCCTCCAGGGACTGGGAAGACGCTATTAGCCAAGGCTATTGCTGGTGAAGCAGGTGTCCCATTTTTCTCAATCTCAGGTTCTGAGTTTGTTGAGATGTTTGTTGGTATTGGTGCTTCTCGAGTTCGTGATTTATTCAAGAAGGCCAAAGAGAATGCTCCCTGCATTGTTTTTGTTGATGAAATTGATGCTGTTGGAAGGCAAAGAGGTGCTGGAATTGGCGGAGGAAATGATGAAAGAGAACAGACCCTGAACCAACTTCTGACAGAAATGGACGGGTTTGAGGGTAATACTGGTATCATAGTCGTTGCAGCAACTAACAGGCCAGACATTCTGGACTCTGCTTTATTGCGACCAGGACGGTTTGATAGACAAGTCTCAGTTGATGTCCCAGATATACGGGGAAGGACTGAAATCCTAAAGGTTCACGCGAGCAATAAAAAGTTTGATGCTGATGTTTCTCTTGAGGTAATTGCAATGAGAACACCTGGTTTTAGTGGAGCTGATCTTGCAAACCTCTTGAATGAAGCTGCTATATTAGCTGGTCGGCGTGGAAAAACGGCAATTGCATCCAAAGAGATCGATGATTCTATTGATAGGATTGTTGCTGGAATGGAAGGGACAGTGATGACAGATGGAAAGAGCAAAAGTCTAGTTGCATATCATGAAGTTGGGCATGCCATTTGTGGAACTTTGACTCCCGGTCACGATGCTGTACAAAAGGTAACCCTAGTTCCTCGTGGGCAAGCTCGGGGTCTTACTTGGTTTATTCCTTCAGATGACCCAACTCTGATCTCCAAACAACAACTCTTTGCAAGAATTGTTGGTGGACTAGGTGGCAGAGCAGCAGAGGAAATTATTTTTGGCGAGCCTGAGGTTACAACTGGAGCAGCTGGCGATTTGCAGCAAATAACCGGCTTGGCCAAACAGATGGTAACCACGTTTGGAATGTCTGATATTGGTCCTTGGTCACTTATGGACACATCAGCTCAGAGTGGTGATGTCATCATGAGAATGATGGCAAGAAACTCGATGTCAGAAAGGCTTGCCGAAGACATTGATGCTGCTGTCAAGAGGATCTCAGATGAAGCGTATGAAATCGCACTGAAGCATATAAGGAACAACCGTGAAGCCATGGATAAGATTGTGGAGGTCTTACTGGAGAAGGAGACAATGACTGGAGATGAATTCCGAGCTCTCCTGTCCGAGTTTGTTGAAATTCCAGCTGAAAATCGGGTCCCTCCTTCAACTCCCTCACCAGTTGCTGTTTGA 2076 0.4456 MAAASLSCLVGSSLSTPSNKLTLAKGVNGRQLFLFQRLSSLSMESKTVLVKASLDQRKHEGRRKFLKLLNVGVGLPALLGNGKAYADEQGISPSKMSYSQFLEYLDKDRVKKVDLFENGTIAIVEALSLDNRALRMRVQLPGLSQELLQKLREKNIDFAAHNAQEESDSLLFNLIGNLAFPLILIGGLFLLSRRSSGGMGGPGGPGFPLAFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAVGARIPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGIGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVVAATNRPDILDSALLRPGRFDRQVSVDVPDIRGRTEILKVHASNKKFDADVSLEVIAMRTPGFSGADLANLLNEAAILAGRRGKTAIASKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDAVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEIIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSDIGPWSLMDTSAQSGDVIMRMMARNSMSERLAEDIDAAVKRISDEAYEIALKHIRNNREAMDKIVEVLLEKETMTGDEFRALLSEFVEIPAENRVPPSTPSPVAV* 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2152 691 SMART AAA_5 261 400 IPR003593 -
Lja6g2152 691 CDD AAA 240 397 - -
Lja6g2152 691 Pfam Peptidase family M41 479 667 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Lja6g2152 691 Gene3D Peptidase M41 475 674 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Lja6g2152 691 SUPERFAMILY FtsH protease domain-like 480 676 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Lja6g2152 691 Pfam AAA+ lid domain 420 462 IPR041569 -
Lja6g2152 691 Pfam ATPase family associated with various cellular activities (AAA) 265 396 IPR003959 GO:0005524|GO:0016887
Lja6g2152 691 Gene3D - 91 170 - -
Lja6g2152 691 PANTHER METALLOPROTEASE M41 FTSH 5 681 - -
Lja6g2152 691 Gene3D - 399 474 - -
Lja6g2152 691 Gene3D - 216 398 IPR027417 -
Lja6g2152 691 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 174 669 IPR005936 GO:0004176|GO:0004222|GO:0016020
Lja6g2152 691 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 31 680 IPR005936 GO:0004176|GO:0004222|GO:0016020
Lja6g2152 691 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 2, CHLOROPLASTIC 5 681 - -
Lja6g2152 691 ProSitePatterns AAA-protein family signature. 368 386 IPR003960 GO:0005524|GO:0016887
Lja6g2152 691 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 223 468 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2152 Lja-Chr6 50518941 50524273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2152 219 669 Miscellaneous Gene Families AT5G53170 50.220 9.66e-138 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2152 K03798 - gmx:100795567 1129.01