Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2131 ATGGAAGTTCCTTCCGAGCCACCGCCAGCAACCGCCACCGGCGAAACCATTAGCAAGAATGCACTGAAGCGGGAACTCAAGAACAAGCAGAAGGAAGAAGAACGGAAACGCAAGGAGGAGGAAAAAGCCAAAAAGGCTGCTGAAATGCAAAGTGCTAAGGATAACAAATCTGCACCTGTTGATGAAGATGATATGGACCCAACGCAATACTTTGAGAATAGGATAAAGTATCTTGCAGGTCAGAAAGGAGAAGGGAATAACCCGTATCCGCACAAGTTCTTTGTCACTATGTCTGTTGCTGAATACATTAAGGAGTATGAAGGTTTAAGCAATGGGCAACACCTTGAGGACGTCTCTGTGTCTTTGGCTGGCCGAATCATGCACAAGCGCGCATCTGGTGCAAAGCTTGTCTTTTATGATCTGCACGGTGGTGGTTTCAAGGTTCAGGTTATGGCCGATGCAAGTAAATCGGACTTGAATGAAGCTGAGTTTTCCAAGTTCCATTCTAATGTGAAGCGTGGTGACATTGTTGGCATCACTGGGTTTCCAGGCAAAAGCAAGAAGGGAGAGCTTAGTATATTCCCTAAGACTTTTGTGGTACTGTCTCACTGTCTGCATATGATGCCGAGGCAAAAATCCGCAGCTGCTGCTGATAATGCAAATTTGAAGAAAAATCTGTGGGTACCAGGAAATACCAGGAATCCTGAAACCTACATTTTGAAAGATCAGGAAACAAGATACCGATTACGCCATTTGGATTTGATGCTTAATCCAGAGGTTCGAGAAATATTCAAGACTAGGTCCAAAATCATTTCTTACATTAGGAGGTTCCTTGATGACCTTGATTTCTTGGAGGTTGAAACACCTATGATGAACATGATTGCTGGTGGAGCTGCAGCCCGTCCATTTGTAACACATCACAATGATCTTAATATGAGGTTATTCATGAGAATTGCTCCAGAACTCTATCTTAAGGAGTTGGTTGTTGGTGGGCTGGACCGTGTTTATGAAATTGGTAAACAATTTAGGAATGAGGGCATTGATTTGACTCATAATCCTGAGTTTACTACCTGTGAGTTCTATATGGCATATATGGACTACAACGACTTAATGGAACTAACTGAGCAATTGTTGAGTGGTATGGTTAAGGAGCTTACAAAAGGCAGCTATAAAATCAAGTATCATGCAGATGGGATTGATAAGGATCCTATTGAAATCGATTTTACTCCACCTTTCAGAAGGATTGACATGATTGAAGATTTAGAGAAGATGGCAGGCCTCAATATTCCCAAAGACTTGTCAAGTGAGGAAGCTAACCAATATCTGAGGGATGCTTGCTTGAAGCATGAGATCAAATGCCCTCCTCCCGAAACAACTGCTCGTTTGTTGGATAAACTTGTGGGGCACTTTTTGGAAGAAACGTGTGTGAATCCTACATTCATCATAAACCATCCTGAGATAATGAGTCCATTGGCAAAGTGGCACAGATCAAAACCAGGCCAGACTGAACGTTTTGAATTGTTTGTTAATAAACATGAAGTTTGCAATGCATATACGGAATTGAACGACCCTGTGGTGCAACGACAGAGATTTGCTGAACAACTAAAGGACCGGCAATCAGGTGATGATGAGGCAATGGCCTTAGATGAAACATTTTGTACTGCTTTGGAGTATGGTTTGCCACCAACAGCTGGTTGGGGTTTGGGTATTGATAGGTTGACCATGATATTCACTGATTCACAGAATATTAAGGAGGTTCTACTTTTCCCTGCCATGAAGCCTCAAGATTGA 1791 0.4249 MEVPSEPPPATATGETISKNALKRELKNKQKEEERKRKEEEKAKKAAEMQSAKDNKSAPVDEDDMDPTQYFENRIKYLAGQKGEGNNPYPHKFFVTMSVAEYIKEYEGLSNGQHLEDVSVSLAGRIMHKRASGAKLVFYDLHGGGFKVQVMADASKSDLNEAEFSKFHSNVKRGDIVGITGFPGKSKKGELSIFPKTFVVLSHCLHMMPRQKSAAAADNANLKKNLWVPGNTRNPETYILKDQETRYRLRHLDLMLNPEVREIFKTRSKIISYIRRFLDDLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMRLFMRIAPELYLKELVVGGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAYMDYNDLMELTEQLLSGMVKELTKGSYKIKYHADGIDKDPIEIDFTPPFRRIDMIEDLEKMAGLNIPKDLSSEEANQYLRDACLKHEIKCPPPETTARLLDKLVGHFLEETCVNPTFIINHPEIMSPLAKWHRSKPGQTERFELFVNKHEVCNAYTELNDPVVQRQRFAEQLKDRQSGDDEAMALDETFCTALEYGLPPTAGWGLGIDRLTMIFTDSQNIKEVLLFPAMKPQD* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2131 596 Coils Coil 19 55 - -
Lja6g2131 596 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 264 594 IPR006195 -
Lja6g2131 596 TIGRFAM lysS_bact: lysine--tRNA ligase 67 595 IPR002313 GO:0004824|GO:0005524|GO:0006430
Lja6g2131 596 MobiDBLite consensus disorder prediction 20 66 - -
Lja6g2131 596 CDD LysRS_N 119 254 IPR044136 GO:0000166
Lja6g2131 596 PRINTS Lysyl-tRNA synthetase signature 324 337 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Lja6g2131 596 PRINTS Lysyl-tRNA synthetase signature 295 311 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Lja6g2131 596 PRINTS Lysyl-tRNA synthetase signature 279 289 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Lja6g2131 596 PRINTS Lysyl-tRNA synthetase signature 477 493 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Lja6g2131 596 PRINTS Lysyl-tRNA synthetase signature 342 359 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Lja6g2131 596 Gene3D Bira Bifunctional Protein; Domain 2 238 596 IPR045864 -
Lja6g2131 596 PANTHER LYSINE--TRNA LIGASE 11 596 - -
Lja6g2131 596 PIRSF LysRS2 8 596 IPR034762 GO:0004824|GO:0005524|GO:0006430
Lja6g2131 596 SUPERFAMILY Class II aaRS and biotin synthetases 242 593 IPR045864 -
Lja6g2131 596 SUPERFAMILY Nucleic acid-binding proteins 65 209 IPR012340 -
Lja6g2131 596 CDD LysRS_core 257 594 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Lja6g2131 596 Hamap Lysine--tRNA ligase [lysS]. 73 595 IPR002313 GO:0004824|GO:0005524|GO:0006430
Lja6g2131 596 Pfam OB-fold nucleic acid binding domain 120 197 IPR004365 GO:0003676
Lja6g2131 596 Pfam tRNA synthetases class II (D, K and N) 242 592 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Lja6g2131 596 Gene3D - 68 210 IPR012340 -
Lja6g2131 596 MobiDBLite consensus disorder prediction 1 66 - -
Lja6g2131 596 PANTHER LYSYL-TRNA SYNTHETASE 11 596 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2131 Lja-Chr6 50233572 50240338 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2131 K04567 - gmx:100785660 1085.86