Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2111 ATGGCATTTGAATATGAACTTATGCATATTCTTCTGTTGTTAGCCTTCTCAACATGCTGTTTCTCATCAATTCATACAAGTACAACCACCGCATCTTTAGGTACCTCAAAATCTAAGCCTCATAGATTGGTCTCCAAACTTATTCACCATCGCTCTGTTCTGCATCCACACTACAATCCAAAAGAAACTGCGAAAGACCGAATGAAACTTGATATCCAACACTCAGTTGCGCGTTTAGCCTACTTGCGAGCAAGGATTGATAATGGTTCATTGATCTCTAATGACTACAGGGCAAGCCTTTCTCCCTCTCTAACTAGTAGAACCATACTGGCAAATCTCTCAATAGGCCAACCCCCCACCCCACAACTAGTTATCATGGACACTGGCAGTGCCCGCTTCTGGGTCATGTGCACCCCTTGCTTAAATTGTGTCCACCATTCACTCCCAATTTTCGATCCTTCTAAGTCTTCCACCTATTTCGCACCATGCAGAACACCCTGTGGCTTCAGTGGCTGCAAATGCGACCTCTCGGATCGGTTCACATTCAATGTCAATTATGCAGACGGATCCTCCTCATCAGGAACACTCGGCCGCGACATGCTGGTCTTCGAGACAGCTGATGAAGGTACGGTTCTGGTCCCCTACATAGAATTCGGGTGTGGCCACCAAATCAGGTACAATAAAGATCCAGGGTATAATGGAATATTAGGACTCAATAGTGGACCTGTGTCTCTGGTGTCACAAATTGGCAGAAGATTCTCTTACTGCATAGGCAGCTTAACTGACAAAAACTACAATTACAATCAATTGATATTAGGTGAAGGGGCAGATCTAGAAGGTTATTCTACGCCTTTGCAAGAGCATCGTGGCTTTTACTATATAACCATGGAAGGCATTAGTGTAGGAGAAAAGAGGCTTGACTTAGCTCCAACAACTTTTGAGATGAAAGAGGATGGCACAGGTGGAGTTATCATTGACACAGGGACTACAATGACCTACCTAGTTGATGATGCTTATAAATTGTTATACAGAGAAGTTAGAAACATCCTTCGGCAGTCGCTTAAAGAAACTACATTTGAAAATATTCCATGGCAAATTTGCTACTTGGGGGATGTGAGCAGGGACCTGGTGAGGTTTCCAGTGGTTACCTTCCATTTTGATGAAGGAGCAGATTTGGCTTTGGACCCTGGAAGCCTTTTCGAACAGGTGACGGATAATGCATTTTGCATGGTTGTAGGTCCAATCAGTGAGTTTGGCCTGGGGAGTATTCCTTCAATTATTGGGTTGTCAGCTCAGCAGAGTTACAATGTGGGATATGACCTTGAGAATGGCTTTCTTTACTTCCAAAGAATTGATTGTGAACTTCTTAGTGGTTGA 1377 0.4372 MAFEYELMHILLLLAFSTCCFSSIHTSTTTASLGTSKSKPHRLVSKLIHHRSVLHPHYNPKETAKDRMKLDIQHSVARLAYLRARIDNGSLISNDYRASLSPSLTSRTILANLSIGQPPTPQLVIMDTGSARFWVMCTPCLNCVHHSLPIFDPSKSSTYFAPCRTPCGFSGCKCDLSDRFTFNVNYADGSSSSGTLGRDMLVFETADEGTVLVPYIEFGCGHQIRYNKDPGYNGILGLNSGPVSLVSQIGRRFSYCIGSLTDKNYNYNQLILGEGADLEGYSTPLQEHRGFYYITMEGISVGEKRLDLAPTTFEMKEDGTGGVIIDTGTTMTYLVDDAYKLLYREVRNILRQSLKETTFENIPWQICYLGDVSRDLVRFPVVTFHFDEGADLALDPGSLFEQVTDNAFCMVVGPISEFGLGSIPSIIGLSAQQSYNVGYDLENGFLYFQRIDCELLSG* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2111 458 SUPERFAMILY Acid proteases 110 453 IPR021109 -
Lja6g2111 458 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 323 334 IPR001969 GO:0004190|GO:0006508
Lja6g2111 458 PRINTS Pepsin (A1) aspartic protease family signature 323 334 IPR001461 GO:0004190|GO:0006508
Lja6g2111 458 PRINTS Pepsin (A1) aspartic protease family signature 115 135 IPR001461 GO:0004190|GO:0006508
Lja6g2111 458 Pfam Xylanase inhibitor C-terminal 292 449 IPR032799 -
Lja6g2111 458 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 31 455 - -
Lja6g2111 458 Gene3D Acid Proteases 276 456 IPR021109 -
Lja6g2111 458 PANTHER OS07G0603500 PROTEIN-RELATED 31 455 - -
Lja6g2111 458 Pfam Xylanase inhibitor N-terminal 111 273 IPR032861 -
Lja6g2111 458 Gene3D Acid Proteases 94 273 IPR021109 -
Lja6g2111 458 ProSiteProfiles Peptidase family A1 domain profile. 109 449 IPR033121 -
Lja6g2111 458 CDD pepsin_A_like_plant 110 453 IPR034161 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2111 Lja-Chr6 49720378 49721916 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2111 113 456 Miscellaneous Gene Families AT1G44130 26.667 1.89e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2111 - - gmx:100779317 609.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2111 6 49720378 49721916 Lja6g2111 6 49720378 49721916 ECH