Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2088 ATGCGCTCAGGAGCTTGTACATTGCAGCAGACCCTCACAGCGGAGGCTGCTTCAGTCTTGAAGCACTCTCTGGGGCTTGCACGCCGGAGGGGCCATGCACAGGTCACCCCTCTGCATGTTGCAGCCACATTGCTGAGCCTAAGAGCTTCTTCTTTAAGAAGAGCTTGTCTCAAATCTCAGCCACAACAACAACAAATCCATCATCATCATCATCTTCAATCTTCACATTCACACCATCATCCTCTTCAGTGCAGGGCACTTGAGCTCTGCTTCAATGTGGCCCTCAACAGGCTCCCAACAACACCAGGTCCTCTGCTCCACTCTCAGCCTTCGCTCTCGAACGCGCTCATCGCCGCGCTTAAGAGAGCGCAGGCTCACCAGAGAAGGGGCTGCATTGAGCAGCAGCAACAGCAGCCTCTTCTCACCATCAAGGTGGAGCTGGAGCAGCTCATCATTTCAATTCTTGATGACCCTTCTGTTAGCAGGGTCATGAGAGAAGCAGGGTTCTCAAGCACTACTGTTAAGAGCCACATAGAGGACTCTTCTTCTTCTGCTCCTCCTAATTCTGTTTTTTACAACAGTTCTGGTGGTGGTGTTTTCTCTTCTCCTTCTTCACCTGCTACTAGTGAGAATCATAACCATTTCTTGGCTTCTTATAGCCCTGCATTCCTCTGTTCTCCTCTGAAGAAAGCTTCTTCAGTTTACCCCATCTCTGAGCCAGTGCCTTCTTTCAAGGAAGATATCAAGGTTGTTCTTGATGTTCTCTTGAGGAAGAAGAAGAAGAACACAGTGATTGTTGGTGACTCTTTGTCATTAACTGAAGGCCTTGTGGGGGAACTCATGGGGAGGTTGGAAAGAGGAGAGGTTCCTGATGAGTTGAAGTCAGCACATTTCATCAAGTTTCAGTTTGCACCTGTCTCTTTGAGGTTCATGAAAAGGGACGAAGTGGAAATGAACCTCTCAGCACTGAAGAGGAAGGTGGATTCTGCTATTGCTTCAGGTGGTGGAGGTGGAGGTGCTATTTTCTATGTTGGAGACTTGAAGTGGACAGTGGAGGTTGGAGAAGTTTCTGGTTATAACCCTGTTGATCATTTAGTTGCAGAAATAGCAAAGATGTTTTCTGACATGGGAAATTCAAACTCTAAGGTGTGGCTAGTGGCCACAGCAAGTTATCAAACTTACATGAGGTGCCAAATGAGACAACCTTCTCTTGAGACTCAATGGGCTCTTCAAGCTGTTCCTGTTCCATCAGGTGGACTTGGCTTGACTCTCAATGGTTCCAGTGTCCATGATTCAAAGATGGCCATCTCCCAGAACCCATCTCATATGCTGGAAACAAAGCTCTTCATTGACAAGGAGGAGCAGGATAATCTCAACTGTTGTGAAGAATGTGCCTCAAATTATGAAAAAGAAGCACAGTTGTTCAAACCAGGCCAGAAGAAACTGTTGCCTTCCTGGCTTCAGTCTCATAGCACTGAAGCCCATCATAAGGATGAATTATCCCAGTTGAAAAAGAAATGGAACAGACTATGCCAGAGTCTCCACCAGAACAAACAGCCTCAAAACCATTGGAGCAACAGTATACTTGGCAATCAGAGTTCAAATGGCAAGATCTACCCTTATAATTCATCATACCCTTGGTGGCCAAACCAAGGTAGTGCCATCATCCCGGATGCCAGTTCTATATCTTTTGCTGATTCTGCAGCAGCCAAACCTGCTTATAGCTCCAACCTTGTACCTCGGTTCCGGCGTCAGCAATCATGCACCATTGAGTTCAATTTCAGCGATGTAACTCAGAACAATCAATCCACAACCACCTTGGATTCTCTTAAGGGCATGGAGGAAGGTAATAATGAAGTAAAGATTAGTCTTGCTCTAGGAAATTCTTCAACATTCGGTGGTTCAGGGCAAACGGTGGGAAAAAATATAACTACTCAGCGACAAGCTCATATTTGTAAACTGTTGCAGGACAATGTGCCATGGCAATCTGAAACTACTGTTGCTTCAATAGCAGAGGCCTTGGTTGATTCCAAATCAGCAAAGCAAGGTGCAACTTGGTTGTTTTTGCAGGGAAATGACTCTGTTGGGAAAACAAGGTTAGCAAGAGCCATTGCTGAATCAGTTTTTGGCTCAGCTGACAAGCTCCTTCACTTTGACATGTGGAAAATGGAGAAGAATTCAGCAACCCCATTTTCTGAAATGCTGGCTGCCGCACTGAAAACAAATGAAAAGCTTGTCCTTTTGATTGAAAATGCTGATTTTGCTGATGCTCACTTCAAGAAATCCCTTGCAGAAGGATTTGAAACATCTAAGTTTGGAAGTTTAAGCCAAGCAATATTCATATTGAGTAATGGTGGCACTAGAATCAATGAACAGAACAATGAATCAGTGGTCAAGTTGATGTTGCAGATTAGTGAAACCAAGCCTACATTGGAGTTATCTCACAAGAGAAGGGCTGAACTGGATTTTTTTACCAAGAGCAAGAGCCCAAGGATTGAAGAGAAGGAAGAAATTACTGTGTTGGTTTCTGAGCAAAGCAACAGCAGAAAGAAAGACTTTTCAAGACAGTCAAGCTTTAACACTGATCTTGACCTGAACATGAAAGCTGATGAAGAGGATGATGGGGAAGACATTTCAAGTGATTTGACTAGAGAAACCATAGCCGATCCCTTGAACTCAAATGGGTCTCTGGATTCAGTTGAGAACCATTTTGAGTTCAATCAAAGTGCAGCTAAGGAAAGAAAGATGGGAGAGGTGTTTCTGTGGAAGATCAAGGAGTGTTTTGAGGAGGTTTTTGGGAAAGAAAAGCTGGGGAATTTTACTGTAGAAGAGAGGGTGATAGAGGAAATTGGTGTTGGGTGTGATTCTTTTACTAACAGCATGTTTGAGAAATGGCTGAAAGACATTTTTCAAAGCAGTTTACAGACAGTTAAGTTGGGTGGGGGGAAGGGGGGTATAGTTTTTACACTTTGTGGGGGTGGTAAAGAGGATACAGCAAAATTGGATAGTGGGTTCATGAGTTCATGTTTGCCCAACAACATCCAAGTTAACTACTTCATGGATTAA 3066 0.4426 MRSGACTLQQTLTAEAASVLKHSLGLARRRGHAQVTPLHVAATLLSLRASSLRRACLKSQPQQQQIHHHHHLQSSHSHHHPLQCRALELCFNVALNRLPTTPGPLLHSQPSLSNALIAALKRAQAHQRRGCIEQQQQQPLLTIKVELEQLIISILDDPSVSRVMREAGFSSTTVKSHIEDSSSSAPPNSVFYNSSGGGVFSSPSSPATSENHNHFLASYSPAFLCSPLKKASSVYPISEPVPSFKEDIKVVLDVLLRKKKKNTVIVGDSLSLTEGLVGELMGRLERGEVPDELKSAHFIKFQFAPVSLRFMKRDEVEMNLSALKRKVDSAIASGGGGGGAIFYVGDLKWTVEVGEVSGYNPVDHLVAEIAKMFSDMGNSNSKVWLVATASYQTYMRCQMRQPSLETQWALQAVPVPSGGLGLTLNGSSVHDSKMAISQNPSHMLETKLFIDKEEQDNLNCCEECASNYEKEAQLFKPGQKKLLPSWLQSHSTEAHHKDELSQLKKKWNRLCQSLHQNKQPQNHWSNSILGNQSSNGKIYPYNSSYPWWPNQGSAIIPDASSISFADSAAAKPAYSSNLVPRFRRQQSCTIEFNFSDVTQNNQSTTTLDSLKGMEEGNNEVKISLALGNSSTFGGSGQTVGKNITTQRQAHICKLLQDNVPWQSETTVASIAEALVDSKSAKQGATWLFLQGNDSVGKTRLARAIAESVFGSADKLLHFDMWKMEKNSATPFSEMLAAALKTNEKLVLLIENADFADAHFKKSLAEGFETSKFGSLSQAIFILSNGGTRINEQNNESVVKLMLQISETKPTLELSHKRRAELDFFTKSKSPRIEEKEEITVLVSEQSNSRKKDFSRQSSFNTDLDLNMKADEEDDGEDISSDLTRETIADPLNSNGSLDSVENHFEFNQSAAKERKMGEVFLWKIKECFEEVFGKEKLGNFTVEERVIEEIGVGCDSFTNSMFEKWLKDIFQSSLQTVKLGGGKGGIVFTLCGGGKEDTAKLDSGFMSSCLPNNIQVNYFMD* 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2088 1021 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 993 - -
Lja6g2088 1021 PANTHER PROTEIN SMAX1-LIKE 5 1 993 - -
Lja6g2088 1021 SUPERFAMILY Double Clp-N motif 12 179 IPR036628 -
Lja6g2088 1021 Gene3D - 237 417 IPR027417 -
Lja6g2088 1021 Pfam Clp amino terminal domain, pathogenicity island component 145 181 IPR004176 -
Lja6g2088 1021 Pfam Clp amino terminal domain, pathogenicity island component 26 46 IPR004176 -
Lja6g2088 1021 Gene3D - 636 839 IPR027417 -
Lja6g2088 1021 Coils Coil 313 333 - -
Lja6g2088 1021 Gene3D - 9 184 IPR036628 -
Lja6g2088 1021 ProSiteProfiles Clp repeat (R) domain profile. 8 184 IPR004176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2088 Lja-Chr6 49424872 49429276 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2088 - - gmx:102660146 1355.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2088 6 49424872 49429276 Lja6g2088 6 49424872 49429276 ECH