Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2076 ATGGCCCAGCCTATAGTGACCTTCATAGTGCAAAGTCTTGGTGATTTGCTCATTCAAGAAGCTGTTTTCTTGTATGGGGTGGAAGACAAAGTGGAGCAGCTGAGAACTGAATTGAGGATGATGCAGTCTTACTTGCAAGATGCAGACAGAAGGCAAGACGAAGCTGAAGTCCTCCGCAACTGGATTTCAGAAATCAGAGAAGCTGCTTATGATTCTGATGATGTTATTGAGGCATATGCACTCAGAGGAAGAAGAAACTTGACTGCAGGTACTACCCTGAACCTGAACCTCATCAAAAAGTGTGCTTTATTCATCAGACGGTTCAGAGAAATCCATCAGGTTGGATCTCAGGTTGATAACATCATAGAAAGAATCTCTAGCATCACAAAGAGTCTTGAAACTTTTGGCATTCAATCTGAAAGAGGAGCAGCTTCAGATTCTGTGCAAGGGAGACAGAGATCTTTGAGGAGATCTTACTCTCATATCACTGAAGAGGACATAATTGGTGTGGATGATGATGTGAAGACTTTGGAGTCATGTTTGATTGACACCAAAAAAAGCTATAGAGTAGTTGCAATTTGTGGGATGGGGGGTTTAGGAAAGACTACATTGGCTAAAAAAGTGTACCATAGTAGTGATATCAGGCACCATTTTGATAGCTTTGCTTGGGCTCACATATCTCAGCATTGCCAAGCAAGGTATGTGTGGGAAGGGATTCTGTTTAAGCTGATCTCTCCTTCTAAAGAGCAAAGAGAAGAAATTGCCAATTTGAGAGATGATGAGCTTGCAAGGATGCTTAAGGAAGTTCAAGTGGAGAAGAAATGCTTGGTTGTGCTTGATGATATTTGGAGTGCAGATACATGGAGTCATCTTAGTCCTGCATTCCCAACTGGGAGATCACTATCGGCAGTTGGTAGTAAAATATTGCTAACTACTAGAAACACTGATGTTGCATTGCATATGGAACCTACTCGCTATCTTCATGAACCAAGGTGTTTAGATGAAGATGACAGCTGGGTGTTGTTCCAAAAGAAGGCATTTCCAGAAAATGATGATCCAGACTTCAAAATCAGCATAGAGATGGAGAAGTTGGGAAAGGAAATGGTAGGAAGATGTGGAGGTTTACCACTGGCCATAATTGTTCTTGGAGGACTGCTAGCATCAAAGCCTACAATTTATGAATGGAACACAGTGCGTCAGAACATCAATACATACTTGAGAAGAGAAAAAGGCCATGAGCAACACTTAGGGGTATCTGAAGTTCTGGCTTTGAGCTATTACGAATTGCCATACCATTTGAAACCATGTTTCCTGCACTTAGCCCATTTCCCAGAAAACACAGAGATACCAACAAAGAAACTAACAAGAATATGGGTGGCAGAAGGTATCATATCATTGGTTCTTCAGAGTGAAGGAGAAGAAGGTGAGGAAGCTCTTGAGGATGTTGCGCAGCGCTACCTCACTGAGCTCGTGGAAAGGTGCATGATTCAGGTAGTTGAAAAGAGTTCAACTGGAAGAATCAGAACTTGCCAAATGCATAACCTCATGTGGGACCTGTGCAGATCCAAGGCTAAGCAGGAACACTTTCTTGAGTTGATTAATTCATGGAATATAGATGATCCTAAGGCCTTGAGACCAAGAGTTCGAAGGGTCGCGTTGTATCTTGATCAAGACAATATGGATAGATTCTTTCCTTCAAATTTAAAAGGTCACCACCATCTCAGGTCCCTCCTTTGCTACAACGAAAAAACAACTAGGCTTAGTGAGTGGAGCTTGGTGAAGAAGGTTTTCAAAAAATGCAGGTTACTTAGAGTCCTAAACTTGGAAGGTATACAAGGTCAGATAGGGAAGTTGCCAAAAGAAATTGGCTACTTGATCCACCTAAGGTTTCTGAGTCTAAGAAACACAAAAATTGATGAGTTACCTCCCTCAATAGGGAACTTAAAGTGCTTGCAAACCTTGGATATTCTAACAGGAAATTCCACTGTGCAAGTACCTAATGTAATAGGGGACATGAAAAGATTGAGACACTTATATCTACCAGAGTCTTGTGGTGATGGCACTGAAAAATGGGATCTTTGCAATCTGAAAAACTTGCAGACCTTGGTTAACTTCCCAGCAGAGAAGTGTGATGTGAGAGATCTTATGAAACTAACCAATTTAAGAAAATTGGTGATAGATGATCCTAAATTTGGAGATATCTTCAAGTCTTCTAATGTGACATTTAACTACCTTGAGTCATTGTTTTTTGTTAGCTCTGAGGAAATATCAGTTCTCCAAGTAGCTTTAGGATGTCCCAATCTTTACAAGCTACACATAGAAGGGCCTATTGTGAATTTTCCTGAACCACACCAAATTTCTCCCGCGCTTGCCAAGCTGAAGTTGCAAGGTTCTGGACTAATTGAAGATCCAATGAGAACATTGGAGAAGCTTCCCAATTTAAGGTTGCTTGAGTTGCAACTTGATTCATTCATGGGGAAGCAACTTGTTTGTTCTAGCAAAGGTTTCCCTCAGCTGAAGTCTCTGGTTGTGTCTGACTTGACCAACCTTGAAGAGTGGAAGGTGGATAAAGGAGCTATGCCTAGTCTTAACAAGCTTGGGATATCAAATTGTACTAAGCTTAAGATGATTCCAGAGGGGCTAAGGTTTGTCACTAGTCTTCAGGATTTGGAGATCAGATCAATGTTTGCAGGTTTCAGAACAAAACTTGAAAAGGGAGGAGAGGATCATTACAAAGTCCTACATGTGCCAACCGTGGTGTTTCATTATTGTGACTATTAG 2781 0.4121 MAQPIVTFIVQSLGDLLIQEAVFLYGVEDKVEQLRTELRMMQSYLQDADRRQDEAEVLRNWISEIREAAYDSDDVIEAYALRGRRNLTAGTTLNLNLIKKCALFIRRFREIHQVGSQVDNIIERISSITKSLETFGIQSERGAASDSVQGRQRSLRRSYSHITEEDIIGVDDDVKTLESCLIDTKKSYRVVAICGMGGLGKTTLAKKVYHSSDIRHHFDSFAWAHISQHCQARYVWEGILFKLISPSKEQREEIANLRDDELARMLKEVQVEKKCLVVLDDIWSADTWSHLSPAFPTGRSLSAVGSKILLTTRNTDVALHMEPTRYLHEPRCLDEDDSWVLFQKKAFPENDDPDFKISIEMEKLGKEMVGRCGGLPLAIIVLGGLLASKPTIYEWNTVRQNINTYLRREKGHEQHLGVSEVLALSYYELPYHLKPCFLHLAHFPENTEIPTKKLTRIWVAEGIISLVLQSEGEEGEEALEDVAQRYLTELVERCMIQVVEKSSTGRIRTCQMHNLMWDLCRSKAKQEHFLELINSWNIDDPKALRPRVRRVALYLDQDNMDRFFPSNLKGHHHLRSLLCYNEKTTRLSEWSLVKKVFKKCRLLRVLNLEGIQGQIGKLPKEIGYLIHLRFLSLRNTKIDELPPSIGNLKCLQTLDILTGNSTVQVPNVIGDMKRLRHLYLPESCGDGTEKWDLCNLKNLQTLVNFPAEKCDVRDLMKLTNLRKLVIDDPKFGDIFKSSNVTFNYLESLFFVSSEEISVLQVALGCPNLYKLHIEGPIVNFPEPHQISPALAKLKLQGSGLIEDPMRTLEKLPNLRLLELQLDSFMGKQLVCSSKGFPQLKSLVVSDLTNLEEWKVDKGAMPSLNKLGISNCTKLKMIPEGLRFVTSLQDLEIRSMFAGFRTKLEKGGEDHYKVLHVPTVVFHYCDY* 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2076 926 Pfam Rx N-terminal domain 5 85 IPR041118 -
Lja6g2076 926 PANTHER DISEASE RESISTANCE PROTEIN RP 13 895 IPR044974 GO:0006952
Lja6g2076 926 SUPERFAMILY L domain-like 511 894 - -
Lja6g2076 926 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 440 IPR027417 -
Lja6g2076 926 CDD RX-CC_like 2 130 IPR038005 -
Lja6g2076 926 Gene3D - 425 524 IPR036388 -
Lja6g2076 926 Gene3D - 332 424 IPR042197 -
Lja6g2076 926 Pfam NB-ARC domain 172 426 IPR002182 GO:0043531
Lja6g2076 926 PANTHER DISEASE RESISTANCE RPP8-LIKE PROTEIN 3-RELATED 13 895 - -
Lja6g2076 926 Coils Coil 31 51 - -
Lja6g2076 926 Gene3D Ribonuclease Inhibitor 710 898 IPR032675 -
Lja6g2076 926 Gene3D Ribonuclease Inhibitor 551 709 IPR032675 -
Lja6g2076 926 Gene3D - 5 115 - -
Lja6g2076 926 Gene3D - 153 326 IPR027417 -
Lja6g2076 926 PRINTS Disease resistance protein signature 190 205 - -
Lja6g2076 926 PRINTS Disease resistance protein signature 269 283 - -
Lja6g2076 926 PRINTS Disease resistance protein signature 858 874 - -
Lja6g2076 926 PRINTS Disease resistance protein signature 372 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2076 Lja-Chr6 49252706 49256555 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2076 520 731 Receptor kinase-like Gene Family AT3G11080 30.000 2.77e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2076 - - gmx:100305356 1339.32