Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2063 ATGGAGACTCCAACTCCTCCATCTCAACAAGGCGTGGTGAAGAAGAAGGAAACCAGAGGCCGAAAGCCAAAGCCAAAGGATGACAAGAAAGATGAGCATCAGAAAACCCCCAAGGAGACCAAGAAAGCTCAGCAACAACAGCACCATCATCCGCAGCAACAGCAACAGCAACAATCTTCTGTGGATGAGAAGTACACACAATGGAAGTCTCTTGTTCCTGTCCTCTATGACTGGCTCGCCAACCACAACCTCGTTTGGCCCTCTCTCTCTTGCCGATGGGGTCCTCAGCTGGAGCAAGCTACCTACAAAAATCGCCAAAGGCTCTACCTTTCTGAGCAGACTGATGGTAGCGTTCCGAATACTCTGGTGATTGCGAATTGTGAGGTTGTTAAGCCTAGGGTTGCAGCTGCTGAGCACATTTCTCAGTTTAATGAGGAGGCGCGCTCCCCATTTGTGAAGAAGTACAAGACCATCATACATCCTGGCGAGGTGAACAGAATTCGGGAACTGCCGCAGAGTTCTAGGATAGTAGCCACTCATACTGACAGTCCTGATGTCCTTATTTGGGATGTTGAAAGTCAGCCTAACCGCCATGCAGTCCTTGGAGCTACAAACTCTCGTCCGGATTTGATTTTAACTGGACATATAGATAATGCAGAATTTGCTCTTGCGATGTGCCCAACTGAGCCCTATGTGCTTTCTGGAGGAAAGGATAAAACAGTAGTGTTGTGGAGTATTGAAGACCATGTAACATCTGCCTCAGACTCCAAATCTGCTGGGTCAATTATCAAAGGCGAAGGTTACGACAAGACTGCTGATGGCCCTTCTGTTGGACCACGAGGTATCTACCGTGGGCATGAAGATACTGTTGAAGATGTGACTTTTTGTCCTTCTAGTGCACAGGAGTTTTGTAGTGTTGGAGATGATTCCTGTCTCATCTTATGGGATGCACGTGTTGGTTGTAGTCCTGTGGTGAAGGTTGAAAAAGCTCATGATGCTGATCTTCACTGTGTTGACTGGAATCCCCATGATGATAATCTGATTCTTACTGGATCGGCAGATAATTCTGTTCGTATGTTTGATCGCCGCAATCTCACCTCTAATGGAGTTGGGGCACCTATTCATAAATTTGAGGGTCACAAAGCTGCTGTTCTCTGTGTTCAGTGGTCTCCAGACAAAGCATCTGTATTTGGAAGTTCAGCAGAAGATGGTCTCTTAAACATCTGGGACTATGAGAAGGTTGGTAAAAAGATCGAGCGAGCAGGAAAATCAATAAATACTCCTCCAGGGTTGTTTTTCCAACATGCTGGTCATAGAGACAAAGTAGTTGACTTCCACTGGAATGCATATGATCCATGGACGATTGTCAGTGTGTCTGATGACTGTGAAAGTACTGGTGGAGGGGGAACATTGCAGATATGGCGCATGAGTGACCTGATCTACAGGCCAGAGGAGGAGGTTTTGGCAGAGCTTGAGAAATTTAAAGCTCATGTGGTGGCGTGTGCTTCAAAGTCTGAAAAATGA 1524 0.4646 METPTPPSQQGVVKKKETRGRKPKPKDDKKDEHQKTPKETKKAQQQQHHHPQQQQQQQSSVDEKYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQSSRIVATHTDSPDVLIWDVESQPNRHAVLGATNSRPDLILTGHIDNAEFALAMCPTEPYVLSGGKDKTVVLWSIEDHVTSASDSKSAGSIIKGEGYDKTADGPSVGPRGIYRGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGCSPVVKVEKAHDADLHCVDWNPHDDNLILTGSADNSVRMFDRRNLTSNGVGAPIHKFEGHKAAVLCVQWSPDKASVFGSSAEDGLLNIWDYEKVGKKIERAGKSINTPPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDDCESTGGGGTLQIWRMSDLIYRPEEEVLAELEKFKAHVVACASKSEK* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2063 507 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 63 129 IPR022052 -
Lja6g2063 507 ProSiteProfiles Trp-Asp (WD) repeats profile. 377 412 IPR001680 GO:0005515
Lja6g2063 507 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 328 361 - -
Lja6g2063 507 ProSiteProfiles Trp-Asp (WD) repeats profile. 283 316 IPR001680 GO:0005515
Lja6g2063 507 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 377 412 - -
Lja6g2063 507 PANTHER WD-40 REPEAT-CONTAINING PROTEIN MSI4 39 504 - -
Lja6g2063 507 PANTHER WD40 REPEAT FAMILY 39 504 - -
Lja6g2063 507 ProSiteProfiles Trp-Asp (WD) repeats profile. 222 254 IPR001680 GO:0005515
Lja6g2063 507 Pfam WD domain, G-beta repeat 210 245 IPR001680 GO:0005515
Lja6g2063 507 Pfam WD domain, G-beta repeat 372 410 IPR001680 GO:0005515
Lja6g2063 507 Pfam WD domain, G-beta repeat 329 361 IPR001680 GO:0005515
Lja6g2063 507 Pfam WD domain, G-beta repeat 281 316 IPR001680 GO:0005515
Lja6g2063 507 ProSiteProfiles Trp-Asp (WD) repeats profile. 328 361 IPR001680 GO:0005515
Lja6g2063 507 MobiDBLite consensus disorder prediction 21 46 - -
Lja6g2063 507 MobiDBLite consensus disorder prediction 47 61 - -
Lja6g2063 507 SUPERFAMILY WD40 repeat-like 152 479 IPR036322 GO:0005515
Lja6g2063 507 SMART WD40_4 370 410 IPR001680 GO:0005515
Lja6g2063 507 SMART WD40_4 320 361 IPR001680 GO:0005515
Lja6g2063 507 SMART WD40_4 151 190 IPR001680 GO:0005515
Lja6g2063 507 SMART WD40_4 205 245 IPR001680 GO:0005515
Lja6g2063 507 SMART WD40_4 428 475 IPR001680 GO:0005515
Lja6g2063 507 SMART WD40_4 276 316 IPR001680 GO:0005515
Lja6g2063 507 Gene3D - 36 493 IPR015943 GO:0005515
Lja6g2063 507 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2063 Lja-Chr6 49098764 49104577 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2063 285 470 Miscellaneous Gene Families AT5G08390 25.907 3.91e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2063 K10752 - gmx:100781408 916.376
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2063 6 49098764 49104577 Lja6g2063 6 49098764 49104577 ECH