Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2050 ATGGTGGTTCGACTTCGCCTATCTCGATTCGGCTGCAAGAACAAGCCCTTCTACCGCGTCATGGCCGCCGATAGCAGATCCCCAAGAGACGGCAAGCACCTCGAAGTCCTCGGCTACTACAACCCTTTACCAGTCCAAGACGGTGGCAAACGAATGGGTCTCAACTTCGATCGAGTCAAGTATTGGCTTTCTGTTGGAGCTCAACCATCGGAGCCGGTAGAGCGTCTTCTATTCCGGGCTGGGTTGCTTCCTCCGCCGCCGACTGTCGCCATGGGGCGGAAAGGTGGACCGCGTGATATGCGTCCTGTTGATGGGTTAACTGGGCGTGTTATCGATCAGGAGAAGACTGCTACTAGTTCCAACAGCAACAAGGACAAGGAACTTGTACAAGAATGA 396 0.5429 MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPVQDGGKRMGLNFDRVKYWLSVGAQPSEPVERLLFRAGLLPPPPTVAMGRKGGPRDMRPVDGLTGRVIDQEKTATSSNSNKDKELVQE* 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2050 131 SUPERFAMILY Ribosomal protein S16 3 94 IPR023803 -
Lja6g2050 131 PANTHER 30S RIBOSOMAL PROTEIN S16-LIKE 1 122 - -
Lja6g2050 131 Hamap 30S ribosomal protein S16 [rpsP]. 2 80 IPR000307 GO:0003735|GO:0005840|GO:0006412
Lja6g2050 131 Gene3D - 1 130 IPR023803 -
Lja6g2050 131 PANTHER 30S RIBOSOMAL PROTEIN S16 1 122 IPR000307 GO:0003735|GO:0005840|GO:0006412
Lja6g2050 131 TIGRFAM S16: ribosomal protein bS16 3 82 IPR000307 GO:0003735|GO:0005840|GO:0006412
Lja6g2050 131 MobiDBLite consensus disorder prediction 112 131 - -
Lja6g2050 131 Pfam Ribosomal protein S16 9 70 IPR000307 GO:0003735|GO:0005840|GO:0006412
Lja6g2050 131 MobiDBLite consensus disorder prediction 87 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2050 Lja-Chr6 48951223 48952194 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2050 K02959 - gmx:100305630 230.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2050 6 48951223 48952194 Lja6g2050 6 48951223 48952194 ECH