Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2038 ATGGAGTGCGTTGGAGCCAGAAACTTGGCGGCAATGGCGTTTTGTGTCAGTCCTTCTTTGAGGTTGCGGTTACGACGGAAGAAGCTCTGGAGAAGACGAGTTTCATCGTCCGGCCACGCCGTTCGCTGGCGTTCGCATTGTCTGAAGGTGGAGGCCACGGCCGCCGGCGCGGGGACGAGTAGCGAGAGCTGCGTCGTTACTAAGGAGGAATTCGCCGACGAGGAGGATTATGTTAAAGCCGGCGGCTCTGAACTTGTTTTCGTTCAAATGCAGCAGAAGAAATCCATGGAAATGCAATCCAAGCTTGCGGATAAGTTGCAACCTATTTCTATAGGAGATGATATACTGGATATTGTTGTCATTGGTTGCGGTCCGGCTGGTCTTGCTCTGGCTGCTGAATGTGGCATGTTAGGATTAAAAGTGGGGCTTATCGGTCCGGATCTCCCTTTCACAAACAATTATGGTGTTTGGGAGGATGAATTTAAAGGTCTTGGACTTGAAGGTTGTATTGAACATGTTTGGAAAGATACCATTGTTTATCTCGATAATAAGGATCCCATTTTAATTGGACGTTCTTATGGACGAGTTAGTCGACATCTGCTTCATGAGGAGTTGTTGAAAAGGTGTGTTGAGTCAGGTGTCTCATATCTTAGCTCAAGAGTAGAAAGAATTGTTGAGGCTAGCAATGGTAATAGTCATGTTGTCTGTGAATATGATATTAAAGTGCCCTGCAGGCTTGCTACTGTTGCATCAGGAGCAGCTTCAGGGAAACTATTGCAGTATGAGGTTGGGGGTCCAAAGGTGTCTGTACAAACAGCTTATGGTATCGAAGTTGAGGTGGAAAACAATCCTTATGATCCGAACCTGATGGTTTTCATGGATTACAGAGACTACATGAAGCAAAATGTACAATGTTTAGAAGCTAGTTATCCAACATTTCTTTATGCGATGCCCATGTCTTCTACAAAAGTGTTCTTTGAGGAAACCTGTTTGGCATCAGAAGATGCTATGCCTTTTGATTTATTAAAGAAAAAGCTCTTTTCAAGATTAAATACGATGGGGATCAGAATTACCAAAACTTATGAAGAGGAATGGTCGTATATCCCTGTTGGTGGATCCTTACCAAATACAGATCAAAAGAACCTTGCATTTGGTGCAGCTGCATGCATGGTGCATCCAGCCACAGGCTACTCCGTTGTGAGATCTCTATCAGAAGCTCCAAAATATGCTTCAATAATTGCTACTATTTTGAAAGAGAGTCATGCAAGGGGCATTGTTACACATAACAGAACTAAGGAGAATCTATCTATGCAAGCTTGGAATGGACTTTGGCCACAAGAAAAGAAACGGCAGAGAGCATTCTTTCTTTTTGGATTAGCACTTATTCTGCAGCTGGACATTGAGGGCATTAGAACATTCTTCCGTACTTTCTTCTGCTTACCTACTTGGATGTGGCAAGGATTTCTTGGCTCCTCTCTCTCCTCAAGAGATCTTGCATTATTTGCTCTCTACATGTTCATAATAGCACCAAATAACTTGAGAATGAATCTAGTCAAACATCTGCTTTCAGATCCTACTGGGTCAACTATGATAAGGACCTACTTGACGATATAG 1614 0.4325 MECVGARNLAAMAFCVSPSLRLRLRRKKLWRRRVSSSGHAVRWRSHCLKVEATAAGAGTSSESCVVTKEEFADEEDYVKAGGSELVFVQMQQKKSMEMQSKLADKLQPISIGDDILDIVVIGCGPAGLALAAECGMLGLKVGLIGPDLPFTNNYGVWEDEFKGLGLEGCIEHVWKDTIVYLDNKDPILIGRSYGRVSRHLLHEELLKRCVESGVSYLSSRVERIVEASNGNSHVVCEYDIKVPCRLATVASGAASGKLLQYEVGGPKVSVQTAYGIEVEVENNPYDPNLMVFMDYRDYMKQNVQCLEASYPTFLYAMPMSSTKVFFEETCLASEDAMPFDLLKKKLFSRLNTMGIRITKTYEEEWSYIPVGGSLPNTDQKNLAFGAAACMVHPATGYSVVRSLSEAPKYASIIATILKESHARGIVTHNRTKENLSMQAWNGLWPQEKKRQRAFFLFGLALILQLDIEGIRTFFRTFFCLPTWMWQGFLGSSLSSRDLALFALYMFIIAPNNLRMNLVKHLLSDPTGSTMIRTYLTI* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2038 537 Gene3D - 115 439 IPR036188 -
Lja6g2038 537 SUPERFAMILY FAD/NAD(P)-binding domain 115 510 IPR036188 -
Lja6g2038 537 PANTHER - 5 495 - -
Lja6g2038 537 Pfam Lycopene cyclase protein 117 514 - -
Lja6g2038 537 PANTHER LYCOPENE EPSILON CYCLASE, CHLOROPLASTIC ISOFORM X1 5 495 - -
Lja6g2038 537 TIGRFAM carotene-cycl: lycopene cyclase family protein 117 517 IPR010108 GO:0016117|GO:0016705
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2038 K06444 - gmx:100790686 904.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2038 6 48459145 48464307 Lja6g2038 6 48459145 48464307 ECH