Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2021 ATGAGTTTCATCTTCGGCAAGAGAAAAACGCCCGCAGAGCTACTGCGGGAAAATAAGAGAATGTTGGACAAATCGATTAGAGAAATTGAGCGCGAGAGGCAAGGTTTACAAGCACAAGAGAAGAAATTGATTTTGGAGATAAAGAAAAGTGCCAAACAAGGCCAAATGGGAGCTGTTAGAGTTATGGCAAAAGATCTTGTTAGAACAAGGCATCAGGTTGAAAAGTTTTATAAGCTAAAATCGCAGCTCCAAGGTGTATCTCTCAGAATTCAGACATTGAAGTCAACACAAGCAATGGGTGAGGCGATGAAAGGGGTGACGAAGGCGATGGGGCAAATGAATAGGCAAATGAACTTGCCATCTTTGCAGAAAATCATGCAAGAATTTGAGAGACAGAATGAGAAGATGGAATTGACGACTGAGGTGATGGGAGATGCAATAGATGATGCTTTGGAAGGGGATGAGGAAGAAGAGGAAACAGACGATCTAGTGAACCAGGTTCTTGATGAGATTGGAATTAATGTAAACCAAGAGCTTTTGAATGCACCATCATCTGCTGTTGCTGCTCCAGCTGCAAGTACTAAGGTTCCTCAAGTTGAAACTGCAGCGACTGATGATGGCGGGATAGATAGTGATTTACAGGCAAGGTTAGACAACTTGAGAAAAATGTAG 672 0.4241 MSFIFGKRKTPAELLRENKRMLDKSIREIERERQGLQAQEKKLILEIKKSAKQGQMGAVRVMAKDLVRTRHQVEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMELTTEVMGDAIDDALEGDEEEEETDDLVNQVLDEIGINVNQELLNAPSSAVAAPAASTKVPQVETAATDDGGIDSDLQARLDNLRKM* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2021 223 Gene3D - 6 180 - -
Lja6g2021 223 PANTHER CHARGED MULTIVESICULAR BODY PROTEIN 1 223 IPR005024 GO:0007034
Lja6g2021 223 Pfam Snf7 17 186 IPR005024 GO:0007034
Lja6g2021 223 Coils Coil 12 46 - -
Lja6g2021 223 Coils Coil 119 139 - -
Lja6g2021 223 MobiDBLite consensus disorder prediction 191 211 - -
Lja6g2021 223 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 2 HOMOLOG 1-LIKE 1 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2021 Lja-Chr6 48282898 48286257 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2021 K12191 - gmx:100526885 364.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2021 6 48282898 48286257 Lja6g2021 6 48282898 48286257 ECH