Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1968 ATGAGAACGTCGTCTTTTGGTAGGTATAGCACCGGCGATATCGAAACCGACTCGCCGGAGAATCTCAGAACTTCCTCACCGCCGGCTTCAGAAGGACACGCGCCGTCACATGGTTACAGCTCTATGTTGCCGGTTTTTCTCAACGACCTCCGTACCAACCACCACAAGGAACTAGTTGAGATTACATTGGAGCTCGAAGACGACGCCGTCGTCCTCTGCAACGTGGCGCCGGCTTCCTCCGGCGCCGGAACTTCCTCCTCGTCAAGTCACGCCACCGGAGATGAAGGAACCTCCGCCTCCGGTGCCGGAGCCGTGGCGAGGAGTTTGTCCAAGAATCTCTCGATCACGTCGAGGATTCGGAGGAAGTTTCCGTGGTTGCGGTCGATGTCGATGAGGACGTCGGCGTCGTCGACGGAGAGTGTGGAGGATCCGGTGGAGAGTGCGAGGAATGCGCGGAGAATGCAGGCGAAGCTGGAGAGGACGAGATCGAGTGCGCAGAGAGCTTTGAAAGGTTTGAGGTTTATTAGTAAGTCCGGTGAAGCTGGTGAGGAGTTGTGGAGGAAGGTGGAGGAGAGGTTTGGGTCGCTGGCCAAGGATGGGCTGCTGGCAAGAGAAGACTTTGGTGGATGCATTGGGATGGATGATTCTAAGGAATTTGCGGTGGGAGTATTTGATGCATTAGCTCGAAGGAAAGGAAGAAAAGCGAGCAAGATAACCAAAGAAGAGCTGCACCACTTCTGGCAACAAATTTCTGACCAGAGCTTTGATGCTCGCCTTCAGATTTTCTTTGACATGGCAGACAGTAATGAAGATGGAAGAATTACCCGGGAGGAAGTACAAGAGCTCATAATGCTTAGTGCTTCCGCAAACAAGCTATCGAAGCTAAAAGAACAAGCTGAAGGATACGCTGCGTTAATAATGGAAGAATTGGATCCAGAAAATCTAGGTTATATTGAGTTATGGCAGCTAGAAATGTTGTTATTACAAAAGGATAGATACATGAACTACAGCAGACAACTGAGCACCTCAAGTGTTAGCTGGAGTCAAAACATGACTGGTCTAAAGCACAAAAATGAGATCCAAAGATTGTGCAGAACACTCCAATGTCTTGCATTAGAATATTGGAGAAGGGGCTGGGTGTTGTTCCTGTGGTTAGTTACCACTGCTTCCCTTTTTGCCTGGAAATTTTACCAGTATAGAAACAGAACATCTTTCCAAGTCATGGGTTACTGCTTACCGGTAGCCAAAGGTGCCGCAGAGACACTGAAGCTCAACATGGCTCTCATCCTTCTACCAGTTTGTCGAAACACGTTGACATGGCTTCGCTCCACCAGAGCGAGGAAAATTGTCCCCTTTGATGACAATATTAATTTTCACAAGATAATTGCTTGTGCAATAGTTGTTGGAGTCGTTGTTCATGCAGGCAATCACCTTGCATGCGATTTTCCACTTCTCATAAATTCATCCCCAGAAGAGTTTTCACTTATAGCTTCAGATTTCAATAACAAAAAGCCCACATATAAAACACTTCTTACCGGCGTTGAAGGCGTGACTGGAATCTCAATGGTTACTTTGATGGCCATCTCTTTTACTCTGGCAACTCACCACTTCCGGAGAAATGCAGTCAGGCTTCCTCCTCCTCTCAACAGATTGACGGGCTTTAATGCATTTTGGTACTCACACCACCTTCTTGGTGTTGTCTACATTTTGTTGTTCATCCATGGATCATTCTTGAATTTAACCCATCGGTGGTACAATAAAACAACATGGATGTATATCTCCGTTCCACTGTTGTTGTACATAGCAGAGCGTACTCTGCGAACAAGTAGATCAAAGCATTATGCAGTAAAAATTCAGAAGGTTTCGGTGCTACCAGGAAATGTCTTTAGCTTAATCATGTCAAAGCCTAATGGATTTAAGTACAAAAGTGGACAGTACATATTTTTGCAATGCCCAAAAATCTCTCCATTTGAATGGCATCCATTCTCCATTACCTCAGCACCAGGAGATGAGTACCTAAGTGTGCACATCCGCACAGTAGGAGACTGGACGCAAGAACTTAAGCTACTTTTCACCGAAGATGACATACCTCCAGTAAATTGTAATGCAACATTTGGTGAACTAGTCCAAATGGATCAAAGAGAGCATCCGAGACTGTTTGTTGATGGCCCTTACGGAGCTCCAGCACAAGATTTCAAGAATTTTGATGTACTACTCCTCATAGGATTAGGAATTGGAGCAACTCCTTTCATTAGTATTCTCAGAGATCTTCTCAATAACACGAGAGCAAGTGATGAATCAATGGTGCAGGATCAGTCAAACACAGAAACAACCAGATCAGATGAGAGCTGGAATAGTTTTACATCTTCAAATTTGACGCCCGGAGGAAATAAGAGATCACAAAGGACAACAAATGCTTACTTCTACTGGGTGACTAGGGAACCTGGATCCTTTGAATGGTTTAAAGGAGTGATGGATGAAGTTGCGGAAATGGACCACAGAGGTCAAATTGAACTTCACAATTATCTTACAAGTGTCTATGAAGAGGGGGATGCAAGATCAACCCTGATCACCATGATCCAAGCACTAAACCATGCAAAACATGGTGTTGACATCCTCTCCGGCACTCGAGTGAGAACACACTTTGCTCGGCCTAATTGGAGAGAAGTTTTCATCAAGATAGCCTCTAAACATCCGTACTCTACAGTAGGGGTTTTCTATTGTGGGATGCCAGTGTTAGCGAAGGAGCTAAAAAAGCTGTCACTTGAGCTGAGCCACAAGACAACCACACGCTTTGACTTTCATAAGGAGTACTTTTGA 2820 0.455 MRTSSFGRYSTGDIETDSPENLRTSSPPASEGHAPSHGYSSMLPVFLNDLRTNHHKELVEITLELEDDAVVLCNVAPASSGAGTSSSSSHATGDEGTSASGAGAVARSLSKNLSITSRIRRKFPWLRSMSMRTSASSTESVEDPVESARNARRMQAKLERTRSSAQRALKGLRFISKSGEAGEELWRKVEERFGSLAKDGLLAREDFGGCIGMDDSKEFAVGVFDALARRKGRKASKITKEELHHFWQQISDQSFDARLQIFFDMADSNEDGRITREEVQELIMLSASANKLSKLKEQAEGYAALIMEELDPENLGYIELWQLEMLLLQKDRYMNYSRQLSTSSVSWSQNMTGLKHKNEIQRLCRTLQCLALEYWRRGWVLFLWLVTTASLFAWKFYQYRNRTSFQVMGYCLPVAKGAAETLKLNMALILLPVCRNTLTWLRSTRARKIVPFDDNINFHKIIACAIVVGVVVHAGNHLACDFPLLINSSPEEFSLIASDFNNKKPTYKTLLTGVEGVTGISMVTLMAISFTLATHHFRRNAVRLPPPLNRLTGFNAFWYSHHLLGVVYILLFIHGSFLNLTHRWYNKTTWMYISVPLLLYIAERTLRTSRSKHYAVKIQKVSVLPGNVFSLIMSKPNGFKYKSGQYIFLQCPKISPFEWHPFSITSAPGDEYLSVHIRTVGDWTQELKLLFTEDDIPPVNCNATFGELVQMDQREHPRLFVDGPYGAPAQDFKNFDVLLLIGLGIGATPFISILRDLLNNTRASDESMVQDQSNTETTRSDESWNSFTSSNLTPGGNKRSQRTTNAYFYWVTREPGSFEWFKGVMDEVAEMDHRGQIELHNYLTSVYEEGDARSTLITMIQALNHAKHGVDILSGTRVRTHFARPNWREVFIKIASKHPYSTVGVFYCGMPVLAKELKKLSLELSHKTTTRFDFHKEYF* 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1968 939 Gene3D - 726 939 IPR039261 -
Lja6g1968 939 MobiDBLite consensus disorder prediction 1 37 - -
Lja6g1968 939 PANTHER RESPIRATORY BURST OXIDASE HOMOLOG PROTEIN E 47 939 - -
Lja6g1968 939 MobiDBLite consensus disorder prediction 78 96 - -
Lja6g1968 939 CDD EFh 237 284 IPR002048 GO:0005509
Lja6g1968 939 Gene3D Translation factors 600 697 - -
Lja6g1968 939 Pfam Ferric reductase NAD binding domain 735 921 IPR013121 GO:0016491
Lja6g1968 939 Coils Coil 148 168 - -
Lja6g1968 939 MobiDBLite consensus disorder prediction 1 31 - -
Lja6g1968 939 Pfam Ferric reductase like transmembrane component 417 571 IPR013130 -
Lja6g1968 939 Gene3D - 158 275 - -
Lja6g1968 939 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 733 939 IPR039261 -
Lja6g1968 939 SUPERFAMILY Riboflavin synthase domain-like 613 728 IPR017938 -
Lja6g1968 939 Pfam Respiratory burst NADPH oxidase 157 257 IPR013623 GO:0004601|GO:0050664
Lja6g1968 939 PRINTS Cytochrome B-245 heavy chain signature 740 757 IPR000778 GO:0016020|GO:0016491
Lja6g1968 939 PRINTS Cytochrome B-245 heavy chain signature 717 730 IPR000778 GO:0016020|GO:0016491
Lja6g1968 939 PRINTS Cytochrome B-245 heavy chain signature 517 540 IPR000778 GO:0016020|GO:0016491
Lja6g1968 939 MobiDBLite consensus disorder prediction 78 103 - -
Lja6g1968 939 SFLD NADPH oxidase subgroup (NOX) 129 939 - -
Lja6g1968 939 Pfam FAD-binding domain 614 728 IPR013112 GO:0016491
Lja6g1968 939 PANTHER NADPH OXIDASE 47 939 - -
Lja6g1968 939 SUPERFAMILY EF-hand 180 340 IPR011992 -
Lja6g1968 939 ProSitePatterns EF-hand calcium-binding domain. 267 279 IPR018247 -
Lja6g1968 939 MobiDBLite consensus disorder prediction 764 799 - -
Lja6g1968 939 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 611 731 IPR017927 GO:0016491
Lja6g1968 939 CDD NOX_Duox_like_FAD_NADP 620 881 - -
Lja6g1968 939 ProSiteProfiles EF-hand calcium-binding domain profile. 254 289 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1968 Lja-Chr6 47574813 47581905 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1968 41 939 Miscellaneous Gene Families AT1G19230 63.694 0.0 1182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1968 K13447 - gmx:100805697 1534.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1968 6 47574813 47581905 Lja6g1968 6 47574813 47581905 ECH