Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1962 ATGTCAAAGCTAAATTCTCCTTTGTTTAACTTTGTTGTTTCAATAACCTTGTTTCAGATCATTGCTTCATTTAGTCTCAGCACATCCCAGAGTCTCATAAACGAGATTAGTACTACTACCACTAAAGCCCTTTTCATCTTTGGGGACTCTACTGTGGATCCTGGCAACAACAACTACATAGACACTGTTCCTGAGAACAAAGCAGATTACAAACCTTATGGACAAAATGGTTTCTTTGAGAAACCCACAGGAAGATTCTCAGATGGCCGTGTCATTGTAGATTTTATAGCTGAATATGCAAAGTTACCCCTGCTTCCTCCATTTTTACAACCATCTGCTGATTCTAGTAACGGTGTCAACTTTGCTTCTGGAGGGGCTGGTGTTCTTGCTGAAACCAATCAGGGATTGGTAATCGACCTTCAAACACAATTAAGTAGTTTTGAAGAAGTGAGGAAATCACTAGCAGAAAAGCTTGGAGAGGAGAAGGCAAAAGAATTGATCTCAGAAGCAATTTATTTCATTAGCATTGGAAGCAACGATTATATGGGTGGTTATCTGGGGAACCCAAAAATGCAAGAAAGCTACAATCCTGAACAATATATTGGAATGGTTATTGGAAACTTGACACAAGCAATCCAAATTCTATATGAGAAAGGGGCTAGAAATTTTGGTTTTCTAAGTTTGTCTCCTTTGGGATGCTTGCCAGCTCTTAGAGCACTGAACCAGGAAGCTAGCAATGGTGGTTGTTTTGAAGTAGCTTCTGCACTTGCTCTTGCACACAATAATGCTTTGAGCAGTGTTCTCACAAGCCTTGACCACATACTTAAAGGGTTTAAGTACTGTCATTCTAATTTCTATGATTGGCTTCAAGATAGAATAAACAACCCTAAAAATTATGGTTTTAAGGAAGGAGCTAATGCTTGCTGTGGAATTGGCCCATATGGGGGCATTTTTACTTGTGGGGGCACCAAGAAAGTTAAAGAGTATGATTTATGTGACAATAGTGACGAGTATGTATGGTGGGATTCTTTCCACCCAACAGAGAAGATCCATGAGCAATTTGCTAAGGCCTTATGGAATGGACCACCTTCAGTAGTAGGACCATACAATTTAGATAACCTCTTCTCCAACATTAAGAACAAGCTCACTATTGCTGATGTGGTTGATAACCCAGAAATTGAGGAAGGGCAATTTCACTTCTGA 1203 0.3965 MSKLNSPLFNFVVSITLFQIIASFSLSTSQSLINEISTTTTKALFIFGDSTVDPGNNNYIDTVPENKADYKPYGQNGFFEKPTGRFSDGRVIVDFIAEYAKLPLLPPFLQPSADSSNGVNFASGGAGVLAETNQGLVIDLQTQLSSFEEVRKSLAEKLGEEKAKELISEAIYFISIGSNDYMGGYLGNPKMQESYNPEQYIGMVIGNLTQAIQILYEKGARNFGFLSLSPLGCLPALRALNQEASNGGCFEVASALALAHNNALSSVLTSLDHILKGFKYCHSNFYDWLQDRINNPKNYGFKEGANACCGIGPYGGIFTCGGTKKVKEYDLCDNSDEYVWWDSFHPTEKIHEQFAKALWNGPPSVVGPYNLDNLFSNIKNKLTIADVVDNPEIEEGQFHF* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1962 400 CDD SGNH_plant_lipase_like 43 362 IPR035669 -
Lja6g1962 400 Pfam GDSL-like Lipase/Acylhydrolase 44 357 IPR001087 GO:0016788
Lja6g1962 400 PANTHER GDSL LIPASE/ACYLHYDROLASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_4G14700) 11 381 - -
Lja6g1962 400 SUPERFAMILY SGNH hydrolase 43 360 - -
Lja6g1962 400 PANTHER - 11 381 - -
Lja6g1962 400 Gene3D SGNH hydrolase 34 362 IPR036514 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1962 Lja-Chr6 47512254 47514736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1962 29 361 Acyl Lipid Metabolism Gene Families AT4G10950 31.563 3.98e-61 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1962 - - gmx:100788045 644.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1962 6 47512254 47514736 Lja6g1962 6 47512254 47514736 ECH