Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1932 ATGGAATTCAAGTATATGTTGGTTGTTGTTATGTGCCTATGGGCTTGGTCTGGATTATTGGCTTGTGCAATTTCTGATGATGGGTTGATGAGGGTTAGTCTAAAAAAGAGGGCTTTAAACTTTCACAGTCTTAATGCTGCAAGAATCAAAGAGGCTGAACAGCAAAGAGATTCTGGGAGTGTTGGTAAAGATTGTTGTGCTGAAAATATAGTGTATCTTAAGAATTATCTTGATGCACAATATTTTGGGGAAATTAGTATTGGTTCTCCCCCACAGTACTTCAATGTTGTGTTTGACACCGGCAGCTCGAATCTTTGGGTCCCGTCTTCCAAATGCATCTTTTCTATCGCTTGCTATTTTCGTTCCAAGTATAGGTCGAGGATATCTAGCACCTATACCGAAATCGGAACATCTTGCAAAATCCCTTATGGCCAAGGATACATTTATGGATTCTTCAGCCAAGATAATGTTCAAGTAGGGGATATCATCGTCAAAGATCAAGAATTTGCTGAGATTACAAGGGAAGGATCTTTGGCCCTTTTAGCTCTTCCATTTGATGGGATACTTGGACTTGGATTCATGGATATTTCAGTTGGAGGAGTCACTCCAGTGTGGTATAATATGATAGAACAAGGGAAACTATGCTGCCAAATGTTTTCTCTTTGGCTAAATCAAGACCCAATGGTAGAGATAGGGGGTGAGATTGTCTTTGGTGGTGTTGACTTCAGGCATTTTAGAGGTGACCATACTTATGTTCCACTTTCTCAAAAGGGTTATTGGCAGATTGAGGTGGGAGATATTCTACTAGCAAATAATTCTACAGGAATATGTGAGGGAGGCTGTTCTGCAATTATAGACTCAGGAACCTCCTTAATTGCTGGTCCAACTAGTGTTGTGACTCAAATTAACCATGCCATTGGAGCAGAGGGATATGTCAGTCTTGAATGCAAAAACATTGTCCATAACTATGGGAATTTGATATGGGAATCCTTGATTTCTGGGTTAACTCCTGAGATCATATGCAGTGACATTGGACTCTGTTCAAATAATGGACTTCATTCAGTGGATGGTGTTATTGAAAGACTGGAGCATAATGAAAGTTTGGACGGATCGAAAACTTGGGAGAGACCCTTTTGTACTTTCTGCAGTATGATTGCCTTTTGGATGCAAGCTCAGGTTAAGCAAAGCAATGTAAAGGAAAAAGTACTAAAATATGTGGATGAGCTGTGTGAAAAGCTCCCAAATCCGGCGGGACAATCATTTATAAACTGCAATAGTACTGCAACTATGCCACCCATTACATTCAAGATTGGAAACAAGTCCTTTGCCCTCTCTCCAGAACAGTATATCCTTAGAGTTGAAGGAGGGTGTTCTACTGTCTGTTATGGCGGTTTTGTTGCTCTAGATGTACCTTCCCCACAGGGTCCTCTCTGGGTTCTTGGAAATATTTTATTGAGAGCATATCACACAGTGTTTGACTATGGCAATCTCCGCATAGGATTTGCAGAAGCTGCATAG 1518 0.4071 MEFKYMLVVVMCLWAWSGLLACAISDDGLMRVSLKKRALNFHSLNAARIKEAEQQRDSGSVGKDCCAENIVYLKNYLDAQYFGEISIGSPPQYFNVVFDTGSSNLWVPSSKCIFSIACYFRSKYRSRISSTYTEIGTSCKIPYGQGYIYGFFSQDNVQVGDIIVKDQEFAEITREGSLALLALPFDGILGLGFMDISVGGVTPVWYNMIEQGKLCCQMFSLWLNQDPMVEIGGEIVFGGVDFRHFRGDHTYVPLSQKGYWQIEVGDILLANNSTGICEGGCSAIIDSGTSLIAGPTSVVTQINHAIGAEGYVSLECKNIVHNYGNLIWESLISGLTPEIICSDIGLCSNNGLHSVDGVIERLEHNESLDGSKTWERPFCTFCSMIAFWMQAQVKQSNVKEKVLKYVDELCEKLPNPAGQSFINCNSTATMPPITFKIGNKSFALSPEQYILRVEGGCSTVCYGGFVALDVPSPQGPLWVLGNILLRAYHTVFDYGNLRIGFAEAA* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1932 505 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 6 505 IPR001461 GO:0004190|GO:0006508
Lja6g1932 505 Gene3D Acid Proteases 30 239 IPR021109 -
Lja6g1932 505 PRINTS Pepsin (A1) aspartic protease family signature 283 294 IPR001461 GO:0004190|GO:0006508
Lja6g1932 505 PRINTS Pepsin (A1) aspartic protease family signature 233 246 IPR001461 GO:0004190|GO:0006508
Lja6g1932 505 PRINTS Pepsin (A1) aspartic protease family signature 478 493 IPR001461 GO:0004190|GO:0006508
Lja6g1932 505 PRINTS Pepsin (A1) aspartic protease family signature 87 107 IPR001461 GO:0004190|GO:0006508
Lja6g1932 505 ProSiteProfiles Saposin B type domain profile. 311 351 IPR008139 -
Lja6g1932 505 SUPERFAMILY Acid proteases 10 504 IPR021109 -
Lja6g1932 505 PANTHER FUNGAL PROTEINASE A, ASPARTIC PROTEINASE SUPERFAMILY PROTEIN 6 505 - -
Lja6g1932 505 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Lja6g1932 505 SUPERFAMILY Saposin 313 414 IPR011001 -
Lja6g1932 505 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 283 294 IPR001969 GO:0004190|GO:0006508
Lja6g1932 505 ProSiteProfiles Saposin B type domain profile. 375 416 IPR008139 -
Lja6g1932 505 Pfam Eukaryotic aspartyl protease 80 504 IPR033121 -
Lja6g1932 505 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 96 107 IPR001969 GO:0004190|GO:0006508
Lja6g1932 505 ProSiteProfiles Peptidase family A1 domain profile. 81 502 IPR033121 -
Lja6g1932 505 Gene3D - 311 414 - -
Lja6g1932 505 Pfam Saposin-like type B, region 1 377 414 IPR007856 GO:0006629
Lja6g1932 505 Pfam Saposin-like type B, region 2 315 347 IPR008138 -
Lja6g1932 505 Gene3D Acid Proteases 240 505 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1932 Lja-Chr6 47050467 47054473 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1932 K08245 - gmx:100782139 822.772