Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1896 ATGGATTCCCCACCTTCCCAACAACCGTGGGGAAGGTCACCCACCTCCCCCTCCTTCTCCTTCTCCTCCAATTCAATCCAATCCCTCTCCTCCATCCTCAACAACCCTCTCTCCTCCACCACCATCTCCCCTCCCGAATTCGCCCTCATCTCCACCACCAAATCCACCTCCGACATCTCCCGATCCGACTTCCTCCCTTACCTCTCCGCCGTCGCCGATCCCCTCCACCGCTTCCACCACATCCGCAACCACGCCACCAACGAGATCATCGCCGATCTCCAACCCGCCGCCGGTGAGGCTCTCGTCGCCTGTCTCCGCGAGGTCCCCTCGCTCTACTTCAAGGAAGACTTCCGCCTCGAGGATGGCTCCACGTTCCGCGCCGCGTGCCCGTTCTCCGCCATCTCCGAGAACGCCGCGCTTCAGGAGAAGCTATCGCAGTATCTTGATGTGGTCGAGCTGCACCTTGTTAAGGAGATCTCGTTGCGGTCTTCGTCGTTCTTTGAGGCTCAAGGGCAGTTGCAGGACCTTAATGCGAAGATCGTTGAAGGGTGTGCGCGGATTCGGGAGCTGAAGGATACGGTTCGGCTTATCGATTCCGATTTGGTTGAGTCGGCGAGGCAGATTCAGCAGCTCAATGCTACCAGGACGAACCTCTTGGCGCTTCTGCAGAAACTCAGGCTCATTTTGTACGTCAATCAAGCCCTCTCTGCTCTCAAATTGCTTGTTGCGTCTGCAGATTGTGCTGGAGCGCTGGATGTAACCGATGATTTGCAACAGTTGCTGGATGGAGATGAGCTCACTGGTCTACACTGCTTTCGTCATCTTAGAGATCATGTAATAGGCTTTATAGAATCCATAAACAGCATTCTTTCCGCAGAGTTTATTCGGGCTTCTTTACATGATGCTACAGAAACGGATGTGATTATTTTATCCAAAGCTAAAGCAAGGGCTTCCCTTCCCATGAATGGAAAGGATGATGAAGTAAAGTTAGAAGAAGAAGAAACCACTAATTTCAAAGATCGTCTTCTTCCTACTGCAATTGGGTTGCTTAGAACAGCTAAACTCCCCTCTGTTCTGAGGTTCTATCGAGATACACTGACTGCTGATATGAAGAGTGCTATTAAGACTGCTGTTGCTGAGTTACTTCCAGTTCTTGCTGCTCGGGGCTCGGAATCAGAATTCTTTTCTGGAGACAGAGCTGCAGATGCAGATGGTGGAGGTGCATCACTTGCTAGCAAGTTAAGGAGCCTATCATCTGATTGCTTTGTGCATCTTCTGAGTGCTATTTTCATGATAGTGCAGGCACATTTAGTGCGGGCTGCTGAAGTGAAAAAGGCCATTGAATGGATTTTGAGCAACCGTGATGGTCATTATGCTGCTGACTCAGTTGCTGCTGCAATTGCTCATGGTGCTGTAGCCGCCGAAATATCTCAAGAAAGTGAGATTCATGGTACTACTTTGTTGCCATATTCACCACAAAGAAGTGTTGCCAAGGGTCCTTTCCAGGGAAAAACAATTGATGCAGTGAGCTCCTCAAACATGTCAAAAAATTTCAGAGCTGATGTATTGCGAGAAAACGCAGAAGCTGTCTTTGCAGCGTGCGATGCTGCTCATGGAAGATGGGCAAAGCTTCTCGGGGTCCGTGCTGTTCTCCATCCTAGGTTGAAATTGCAGGAGTTTCTAACTATATACAACATCACCCAGGAGTTCATTACTGCTACTGAAAAAATTGGTGGAAGATTGGGATACAGCATTCGTGGGACACTGCAGTCACAGGCCAAGGCTTTTGTTGATTTTCAGCATGAATCTCGGATGGCGAAAATTAAGGCATTGCTTGACCAGGAAACATGGGTGGAGATAGATGTTCCTGAAGAATTTCAATCCATCATTAATATACTTTTTTCATCTGATGTATTGACTTCTGGGAACCTTAATGGCACTGAGGAAGATAATGCACACAGTTACAGTGATAACAATGCGGACGCTGTACATTCAAATGCTGAACATCAGGTTGAGCAGACTAATTCCATCGAAACATCCAGGAAAAGTGCAGGATCGGATGGATCCAAACCCCTTGTTGATTCTGTGGAACCAAATAGAGGGAATAATAGGATTTCATCAGCCCAGAACAACAATGTCGAGAAAGACCATAAAAAATCTGTGTCTCAGGCCCTTTTGTACAAAGGTGTTGGTTATCACATGGTAAACTGTGGCTTAATATTGCTGAAGATGTTGTCAGAATACATCGATATGAACAACGTTTTGCCAACACTGTCTTCAGAAGTTGTTCACCGTGTAGCGGAAATCTTGAAGTTTTTCAACACACGAACATGTCAACTTGTGCTTGGGGCTGGTGCTATGCAGGTGTCTGGTTTGAAGTCCATCACCTCTAAACACCTGGCCTTGGCAAGTCAAGTCATTAGTTTTATACATGCTATTATTCCTGAAATTCGGCAGATTCTTTTTCTCAAAGTACCGGAGACTAGAAAATCATTATTGCTTTCAGAAATTGATCGAGTTGCACAGGATTATAAAGTTCACAGAGATGAAATACATTCAAAATTAGTTCAGATAATGCGAGAAAGATTACTGGTCCATTTACGTGGGTTGCCTCAAATTGTTGAAAGTTGGAATAGACCTGAGGAAGCTGACCCCCAGCCTAGTCAATTTGCTCGGTCCCTTACAAAGGAAGTTGGATACCTGCAACGTGTCTTGTCTCGAACTTTGAATGATGAAGATGTTCATGCAATTTTCAGGCAAGTGGTCATTATATTTCACTCACAAATTTCCGAAGCATTTTCAAGATTTGATATAAGCACTTCCCAAGCACAGAATAGACTATCTCGGGACATCAAACACATTCTTCAATGCATACGGTCATTGCCATCGGGTGATTTAGGTAAATCTGATACCCCAAACTGGGGTCAGCTGGATGAATTCTTGGTGCAAAGATTTGGGTCTGATGCTGTTCAGTAG 2976 0.4614 MDSPPSQQPWGRSPTSPSFSFSSNSIQSLSSILNNPLSSTTISPPEFALISTTKSTSDISRSDFLPYLSAVADPLHRFHHIRNHATNEIIADLQPAAGEALVACLREVPSLYFKEDFRLEDGSTFRAACPFSAISENAALQEKLSQYLDVVELHLVKEISLRSSSFFEAQGQLQDLNAKIVEGCARIRELKDTVRLIDSDLVESARQIQQLNATRTNLLALLQKLRLILYVNQALSALKLLVASADCAGALDVTDDLQQLLDGDELTGLHCFRHLRDHVIGFIESINSILSAEFIRASLHDATETDVIILSKAKARASLPMNGKDDEVKLEEEETTNFKDRLLPTAIGLLRTAKLPSVLRFYRDTLTADMKSAIKTAVAELLPVLAARGSESEFFSGDRAADADGGGASLASKLRSLSSDCFVHLLSAIFMIVQAHLVRAAEVKKAIEWILSNRDGHYAADSVAAAIAHGAVAAEISQESEIHGTTLLPYSPQRSVAKGPFQGKTIDAVSSSNMSKNFRADVLRENAEAVFAACDAAHGRWAKLLGVRAVLHPRLKLQEFLTIYNITQEFITATEKIGGRLGYSIRGTLQSQAKAFVDFQHESRMAKIKALLDQETWVEIDVPEEFQSIINILFSSDVLTSGNLNGTEEDNAHSYSDNNADAVHSNAEHQVEQTNSIETSRKSAGSDGSKPLVDSVEPNRGNNRISSAQNNNVEKDHKKSVSQALLYKGVGYHMVNCGLILLKMLSEYIDMNNVLPTLSSEVVHRVAEILKFFNTRTCQLVLGAGAMQVSGLKSITSKHLALASQVISFIHAIIPEIRQILFLKVPETRKSLLLSEIDRVAQDYKVHRDEIHSKLVQIMRERLLVHLRGLPQIVESWNRPEEADPQPSQFARSLTKEVGYLQRVLSRTLNDEDVHAIFRQVVIIFHSQISEAFSRFDISTSQAQNRLSRDIKHILQCIRSLPSGDLGKSDTPNWGQLDEFLVQRFGSDAVQ* 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1896 991 PANTHER VACUOLAR PROTEIN SORTING 54 20 990 IPR039745 GO:0000938|GO:0042147
Lja6g1896 991 Gene3D - 830 869 - -
Lja6g1896 991 Pfam Vps54-like protein 732 862 IPR012501 GO:0042147
Lja6g1896 991 MobiDBLite consensus disorder prediction 645 686 - -
Lja6g1896 991 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 54, CHLOROPLASTIC 20 990 - -
Lja6g1896 991 MobiDBLite consensus disorder prediction 645 716 - -
Lja6g1896 991 MobiDBLite consensus disorder prediction 1 23 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1896 K17600 - gmx:100804432 1524.22