Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1894 ATGGAGGAAGAGGAACAAGAGCAAAGTGCAGTGAGAATCTTCGTCGGAGGATTGGGTGAAGCCGTCACCGGCGATGATCTCCAGCGGCTATTCGCTTCTCTCGGCACCGTCCAATCAATCGACACAATCCGAACCAAAGGCCGCAGCCTCGCCTACCTCGACTTCATCCCCTCCCCCACCGATCCCAAATCGCTCACCAAGCTCTTCAGCAAGTACAATGGCTGCGCATGGAAGGGTGGAAGGCTCAGACTCGAGAAAGCCAAAGAGAATTACCTTGCACGGTTGAAGAAAGAATGGGAAGAAGAAGCTCTGGTTAACAGTATCCAATCACCATCTGATGATGATGATGTTCCTGCTCAGAATAATGAATTGGAGGAAAACCCGAATGCGAGACGCGCTTCGAATATTCCAGACACGAAGCAGCTCAGGGTTTTCTTTCCCAGATTGAGAAAGGTGAAATCTATACCATTCAGTGGATCTGGCAAGCACAAATATAGTTTCCAGAATATTAAAGTTCCTCCGATGCCCGTGCATTTTTGTGATTGTGAGGAACATTGTAGTCCTTTTGTCAAAGAAAGAGGAAAAGTGCCTTCTCATGGGACAGCAGAAATTGGTGGAATAAATGATGAAGAAATTAACATAATGAATGCTGTGATGAACAAGCTATTTGAAAAAGAAAAGGTTTCCAACACCAAGGATCTTGAAAAGGGGCAGGATTCCTTTAAATCACCTGATGCTTTACCTTTAAATGAATGTGAAGTAGATAGTGCAACCGATGATGATGATGACGGTCTCATTATTAATATTGAGACTAAGAAAAGTAAAGCAGCTTTATCTGGGAGCCATGAACTTGAAAGGATCATGGAAAATCCGGAATCATGGTCGAACAAAACAAGAATTGCCAAGGAAGAACCGAAGGAGAGTATGCTTCAAGTGCAGAAAAGGAGTGATGACAGTCAGAACAAGGTCAAGAAGCGAAAACCACTTCCTGAATTGGAGAGCGAAAGCAATGGGTGTGTCTCTACAACCCCTGGTAGCAAAAGTAATACGAAGACCCTTCCAGATGAGCTGGGATCTGGTGCACATCCTGCAAAAGTTTCATGGATTCAGAAGTCTTCATGGAAAGAACTTCTTGGTCAAGGAGGCAGCGCTGCTTTCAGTGCCTCTCTCATACTGCCGAAGCCCGATTCTGGTATAGATCAACAAAGAACTGATGATCCTTCGACACCCTCATCTGCAAGCGACGAAACTGAAAATAGTGAAAGCGATGATGAATACCCAGGGAGCGAACCTACCAATACACAAGTGATACAAGAGTCCGCTGAACCACAACCTACCAATAAACGAGTGATAAAGGAGCTTGCTAAAGCTCAGCCTACCGATAAAGGAGTGATAAATGAGCCTGCTGAAGTCCAGCCTATCAATAAAGGAGTGATGAATGAGCCTACTGAAGCCCATCCTACCCATAAACAAGTGACAAATGAGCTTGCTGAAACTCAGCATAATGTGGCACCTAATAACACGGGTAGAGGTGCTTCGTGGCTGCGAAAGCAATCCTGGACACAACTGGTTAGTCCAAGTAATAATTCCTTCAGCATTTCGCAAATTTTGCCTGACATTACTTTCCCAGAGCCAATATTCAAGGAGCCTGTTGTGGATCCTGCCAATTCCGATGATTGCAAGCATGGTGGTGTAAATATGGATACTACTAATGAAGCTTTCAACGGGGAGATTATACCAGAGAAGAGTCAGCATACTGATGCCAGTGATACTGCTGCTCCAGTAGTGGAGCAAAAAACTGAAACAAGTCCAGGAGACGACGACACGTCCACTGCTGATATTGAAATAGGCGAAACTTGCTCATTTATGAGGAGTGCTGCTTCTTTGAAAGAGTGGGCAAAAGCTAAGGCTGCACTTAGTGGATCACTCAAGCGAAAGCGTGGTGAGAAGTAA 1953 0.4491 MEEEEQEQSAVRIFVGGLGEAVTGDDLQRLFASLGTVQSIDTIRTKGRSLAYLDFIPSPTDPKSLTKLFSKYNGCAWKGGRLRLEKAKENYLARLKKEWEEEALVNSIQSPSDDDDVPAQNNELEENPNARRASNIPDTKQLRVFFPRLRKVKSIPFSGSGKHKYSFQNIKVPPMPVHFCDCEEHCSPFVKERGKVPSHGTAEIGGINDEEINIMNAVMNKLFEKEKVSNTKDLEKGQDSFKSPDALPLNECEVDSATDDDDDGLIINIETKKSKAALSGSHELERIMENPESWSNKTRIAKEEPKESMLQVQKRSDDSQNKVKKRKPLPELESESNGCVSTTPGSKSNTKTLPDELGSGAHPAKVSWIQKSSWKELLGQGGSAAFSASLILPKPDSGIDQQRTDDPSTPSSASDETENSESDDEYPGSEPTNTQVIQESAEPQPTNKRVIKELAKAQPTDKGVINEPAEVQPINKGVMNEPTEAHPTHKQVTNELAETQHNVAPNNTGRGASWLRKQSWTQLVSPSNNSFSISQILPDITFPEPIFKEPVVDPANSDDCKHGGVNMDTTNEAFNGEIIPEKSQHTDASDTAAPVVEQKTETSPGDDDTSTADIEIGETCSFMRSAASLKEWAKAKAALSGSLKRKRGEK* 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1894 650 Gene3D - 1 92 IPR012677 -
Lja6g1894 650 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 89 IPR000504 GO:0003723
Lja6g1894 650 SUPERFAMILY RNA-binding domain, RBD 6 101 IPR035979 GO:0003676
Lja6g1894 650 MobiDBLite consensus disorder prediction 389 488 - -
Lja6g1894 650 MobiDBLite consensus disorder prediction 583 616 - -
Lja6g1894 650 MobiDBLite consensus disorder prediction 402 416 - -
Lja6g1894 650 MobiDBLite consensus disorder prediction 277 332 - -
Lja6g1894 650 MobiDBLite consensus disorder prediction 277 364 - -
Lja6g1894 650 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 53 IPR000504 GO:0003723
Lja6g1894 650 PANTHER TRANSCRIPTIONAL REGULATOR 1 649 - -
Lja6g1894 650 MobiDBLite consensus disorder prediction 426 445 - -
Lja6g1894 650 MobiDBLite consensus disorder prediction 105 137 - -
Lja6g1894 650 SMART rrm1_1 12 85 IPR000504 GO:0003723
Lja6g1894 650 MobiDBLite consensus disorder prediction 335 355 - -
Lja6g1894 650 CDD RRM_NOL8 12 88 IPR034138 -
Lja6g1894 650 MobiDBLite consensus disorder prediction 105 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1894 Lja-Chr6 46286072 46289276 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1894 - - mtr:MTR_2g048340 759.599