Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1889 ATGGCTTGCGTGAAATTGGGTTCCAAAGCTGATGCGTTCCACCGTCAAGGGCAGGCCTGGTTCTGCACAACCGGGCTACCTAGTGATATAGTTGTTGAAGTTGGTGAGATGTCCTTCCATCTTCACAAGTTTCCCTTGCTCTCTAAAAGTGGGGTTATGGAAAAACTGATTGCTGAAGCTTCTGAGTCAGAGGAAGAATGTGCCATCCACCTTCCTGATATTCCTGGCGGGGCGAAAACATTTGAACTTGTGGCAAAATTCTGCTACGGTGTGAAACTTGAACTTACTGCGTCCAATGTTGTGCACCTCTGGTGTGCTGCTGAGCACCTTGAAATGACTGAGGAAAATGGTGAAGGTAATCTAATTTCACAGGCCGAAACCTTCTTCAGTCAGGTGGTTCTCCGAAGTTGGAAAGACTCTCTGAGGTCACTTCAAACCTGTGATGATGTTCTGCCTGATGCGGAAAAGCTCCACATTGTGAAAAGGTGCATTGAATCACTTGCTGCAAAGGCATCTACTGACCCAAATTTATTCGGGTGGCCAGTACTGGAACGTGGTGGGCCTTTGCAGAGCCCTGGCGGAAGTGTCTTGTGGAACGGAATAAGTACTGGGGCAAGACCAAAGAATTCAAGTGCAGATTGGTGGTATGAGGATGTAACAAATTTGAGTTTACCTATTTATAAGAGGTTGATAGCTGTTATGGAATCTCGAGGAATTCGGCAGGAGATCATTGCTGGTTCTCTTGCTTTCTATGCTAAAATGTATCTACCAGGGTTGAATAGACGCCAGGTTTCTGGTGAGTCCAGCACCCGTCTGACACAGATGGCTTTGGGGTCTCCACCGTGTGAAGAAGACCAGAAGATTCTACTGGAAGAGATTAACCGGTTACTCCCATTGCAGAAGGGCCTGGTCCAAACAAAGTTCCTCTTTGGTCTACTTCGAACAGCCATGATTCTACGAGTGGACTCCTCTTGCATATCAGATTTGGAGAAACGTATTGGGATGCAGCTTGATCAAGCTAATCTGGAAGATCTCTTGATGCCAACTTTCTCATACTCAATGGAGACACTTTACAATGTTGACTGTGTGCAAAGAATTCTTGAGAATTTCCTTGCCATGGATCAGGCTACAGGTGCTGCCTCTCCATGCTCAATTGATGATGGCGAGTTGATGGGATCGCCTTCATTAACGCCAATCACCATGGTAGCCAAGCTGATCGATGGTTACCTGGCAGAAGTTGCCCCAGATGTTAACTTAAAACTTCCCAAGTTTCATGCCCTTGCTGCTGCTGTTCCTGAGTATGCCAGGCCTTTAGATGATGGTTTATATCGCGCTATAGATATTTTTTTGAAGTCTCACCCGTGGTTAGTGGAGTCTGAGAGAGAGCAACTGTGCAGGCTGATGGACTGCCAGAAGCTCTCACTAGAAGCATGCACGCATGCTGCGCAGAACGAGAGGCTACCCATTAGAATAATAGTTCAAGTTCTATTCTTCGAGCAGCTCCAGCTCCGGACTTCAATCGCTGGTTGCTTCCTGGTTTCAGATAATCTCGATGGATCGAGACAGCTAAGAAGTGGTTTTGTCGGGTCCAACGAGGGTGGCGGCGGCTGGGCGTCCGCGGTGAAGGAAAATCAGGTTTTGAAAGTGGGAATGGATAACATGAGGATGAGGGTGTCAGAGCTTGAGAAAGAGTGCTCAACCATGAGGCAGGAGATTGAGAAACTGGGTCGTTCAACAAAGGGATCATCATCGAGCACTTGGGGAGCTGTGTCCAAGAAGCTCGGGTTTAAGATGAAGTCTCAGATGTGCAGTGCTCAAGAAGGATCCGTTAGCAACCAGAACAATGGAAGTAATAAGGTTGTGAAGTTGAAGGAGAGACAAGTTAAGCACCAGAGAAGTTCTTCCATTAGTGATAAAGCTTCACTCTCTTCAATTGTTCTTTCTTAG 1947 0.4679 MACVKLGSKADAFHRQGQAWFCTTGLPSDIVVEVGEMSFHLHKFPLLSKSGVMEKLIAEASESEEECAIHLPDIPGGAKTFELVAKFCYGVKLELTASNVVHLWCAAEHLEMTEENGEGNLISQAETFFSQVVLRSWKDSLRSLQTCDDVLPDAEKLHIVKRCIESLAAKASTDPNLFGWPVLERGGPLQSPGGSVLWNGISTGARPKNSSADWWYEDVTNLSLPIYKRLIAVMESRGIRQEIIAGSLAFYAKMYLPGLNRRQVSGESSTRLTQMALGSPPCEEDQKILLEEINRLLPLQKGLVQTKFLFGLLRTAMILRVDSSCISDLEKRIGMQLDQANLEDLLMPTFSYSMETLYNVDCVQRILENFLAMDQATGAASPCSIDDGELMGSPSLTPITMVAKLIDGYLAEVAPDVNLKLPKFHALAAAVPEYARPLDDGLYRAIDIFLKSHPWLVESEREQLCRLMDCQKLSLEACTHAAQNERLPIRIIVQVLFFEQLQLRTSIAGCFLVSDNLDGSRQLRSGFVGSNEGGGGWASAVKENQVLKVGMDNMRMRVSELEKECSTMRQEIEKLGRSTKGSSSSTWGAVSKKLGFKMKSQMCSAQEGSVSNQNNGSNKVVKLKERQVKHQRSSSISDKASLSSIVLS* 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1889 648 CDD BTB_POZ_NPY3-like 19 122 - -
Lja6g1889 648 ProSiteProfiles NPH3 domain profile. 213 502 IPR027356 -
Lja6g1889 648 Pfam NPH3 family 213 478 IPR027356 -
Lja6g1889 648 PANTHER OS12G0117600 PROTEIN 1 622 IPR043454 -
Lja6g1889 648 Gene3D Potassium Channel Kv1.1; Chain A 14 116 IPR011333 -
Lja6g1889 648 Pfam BTB/POZ domain 27 113 IPR000210 GO:0005515
Lja6g1889 648 MobiDBLite consensus disorder prediction 605 621 - -
Lja6g1889 648 Coils Coil 544 578 - -
Lja6g1889 648 MobiDBLite consensus disorder prediction 634 648 - -
Lja6g1889 648 MobiDBLite consensus disorder prediction 605 648 - -
Lja6g1889 648 ProSiteProfiles BTB domain profile. 28 97 IPR000210 GO:0005515
Lja6g1889 648 SUPERFAMILY POZ domain 16 114 IPR011333 -
Lja6g1889 648 PANTHER - 1 622 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1889 Lja-Chr6 46222281 46226083 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1889 8 574 EF-hand Containing Proteins AT3G44820 48.635 0.0 561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1889 - - gmx:100779836 1114.75