Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1886 ATGGATCAACATGAGGATGAATGCCGCACCGGAGGCGAAAGTAACAGCAAACAAGATGATGAGGAAGCCGTTGCTCACCTTGAGGAAATAAAGAAGTCAATTGAGGCGAAGATCGCTTTACGACAAAGCAATTTGAATCCCGACAGGCCCGACTCAGGATTTTTAAGGACATTGGATTCTAGTATTAAGCGCAACACGGCTGTTATTAAGAAACTGAAGCAGATTAATGAAGAGCTGCGTGAAGCACTGATGGACGAGTTACGAACTGTCAACATGAGCAAATTTGTCAGTGAAGCAGTGGCGGCTATATGTGATGCCAAACTTAGGAGTTCTGATATACAAGCAGCAGTCCAGATCTGCTCTTTGCTTCACCAAAGGTACAAGGACTTTGCACCAAGCCTGATTCAAGGACTTCTCAAAATCTTCTCTCCTGGAAAACCTGGTGATGAATCCGATACTGACAAAAACTTGAAGGCAATGAAGAAGCGCAGTAGTCTGAAACTTCTATTGGAACTTTTTTTTGTTGGAGTTATTGAAGATGGCGCCATTTTTATCACTATCATAAAAGACCTTACCAGTGTGGAGCAGCTAAAAGATCGGGATGCTACACAAACAAGTTTGACACTTCTTTCTAGCTTTGCTCGACAAGGGAGGATTTTTCTAGGACTTTCTGTTAATGGACCAGAAATTCATGAAGAGTTTTTTAAAGGTCTTGCCATCACGGCTGATCAAAAGAAAGTTCTTAGGAAAGCATGTTATGCATTTTATGATGCTGCAGCTGAGCTACTTCAGTCTGAGCATTCTTCACTTCGAGTAATGGAGCATGAAAATTCTAAGATTTTGAATGCAAAAGGTGAGCTCAGCGAGGAAAATGTTGCTTCATATGAAAAGCTTCGCAAATCCTATGACCATTTGTACCGTAATGTCTCATCATTAGCAGAAGCACTTGATATGCAGCCTCCAGTAATGCCAGAGGATGGACACACAACAAGGGTTACTAGTGGCGAGGAGGCTATTTCTTCTGCTTCTGGGAAAGATTCTTCTGTTGTTGAACCGATATGGGATGATGAAGATACACGGGCTTTCTATGAATGTTTACCCGATCTTAGAGCTTTTGTTCCTGCTGTGCTTTTGGGAGAAACGGAACCAAAAAGCAATGAGCAATCTGTAAAAAGTCAAGACCAGTCAACTGAAATATTGCCTGAATCAGACAAAGGGCAAACCACCCGTGAAAGTGGAGAGGTCTCCACAGACCCTAGTGCTTTGCCAGAGGGAGAAAGCATACAAGGAGTGAAGGGTAAAGAAGAACAAGAGAAGTCTAAAGAATTGGACCGAGAGAAGGAAAAAGACAAAGAAAAAGACAAGGACAAAGACAAAGAAAAAGACAAGGACAAAGAAAAAGAAAAAGAGAAAGATAATGACAAAAAGGGGGAAAATGAAAAGGACAAACTCAGAAGTCTTGAAGGAACAAACTTGGATGCTCTGTTGCAGAGGCTTCCTGGTTGTGTGAGCCGTGACCTTATAGATCAACTAACTGTGGAGTTCTGTTATCTAAATTCAAAATCAAATCGGAAAAAGCTCGTGAGGGCATTATTCAGTGTACCAAGGACATCTCTGGAACTACTACCATATTACTCACGCATGGTTGCCACACTATCCACTTGTATGAAAGACGTCTCTTCAATTCTCTTGCAGATGTTGGAGGAGGAATTCAACTTCTTAATAAATAAAAAGGACCAGATGAACATTGAGACAAAGATCAAGAATATCAGGTTCATTGGAGAACTTTGCAAGTTCAAGATTGCCCCTGCTGGCCTAGTCTTCAGTTGTTTGAAGGCATGTTTAGATGACTTTACTCATCACAACATTGATGTAGCTTGCAATCTTCTCGAAACATGTGGCCGGTTTCTGTATCGGTCTCCAGAAACTTCTATACGTATGGCTAACATGTTGGAGATACTGATGCGCTTGAAAAATGTAAAAAACTTGGATCCTCGACATAGCACTTTGGTAGAGAATGCATACTACCTTTGCAAGCCACCGGAAAGATCTGCACGAGTTGCTAAAGTCCGTCCTCCCTTGCATCAGTATATCAGAAAATTACTTTTCTCTGATCTTGATAAATCTACCATTGAGCATGTGCTCCGGCAACTTCGTAAATTACCATGGAGTGAATGTGAACCATATCTTTTAAAATGCTTCATGAAGGTCTACAAAGGCAAATACGGTCAAATTCACCTGATTGCATCTCTTGCTGCCGGTTTAAGTCGCTATCATGATGAGTTTGCTGTAGCTATAGTTGATGAGGTCCTGGAGGAGATTAGAATTGGGCTTGAACTAAATGACTATGGGATGCAGCAAAGACGTGTTGCCTATATGCGATTCTTAGGGGAGCTTTACAACTACAAGCATGCAGACTCCTCTGTCATTTTTGAGACACTATATCTCATTCTTGTCTATGGTCACGGGACACCAGAGCAAGATGTACTCGATCCACCTGAAGATTTTTTTCGTATAAGGTTGATCATTACTCTGCTTGAAACTTGTGGGCATTACTTTGACCATGGCTCTTCTAAGAGGAAACTTGATCGATTCTTGATACACTTCCAGAGGTATATTTTAAGCAAAGGTGCACTGCCACTGGATGTCGAATTTGACTTGCAGGATCTGTTTGTGGACTTGCGTCCCAATATGGTTCGTTACTCTTCTATTGAGGAAGTGAATGCAGCTCTAGTAGAACTTGAGGAGCATGATCGCATTGTTTCTGCTGATAAGGCCAGTGGTGAAAAACAGTCTGAGAAGCCTCCAAGAAGGACCACTTCCTCCATGGTCGTTGGCAATGGACAAAGCATTGATAATGGTGCAGAGGACAACGGAGTGCAAGATGATGTTAATGACGGTGAGGCTGATTCAGGTAGCGATGTAATTGATGAGGAAGGACATGATGATGATGGGTTGGATGAGGAGAATCATGATGATGGGTCTGGGACTGAGGATGAGGATGATGATGAAGGGCCTGGACCTGCTTCTGATGAGGAAGATGAAGTCCATGTAAGACAGAAGGTGACAGAGGTGGACCCTCTGGAAGAAGCCAGTTTTGATCAAGAGCTCAAGGCTGTATTACAGGAGAGTATGGAACAGCGAAGGCTGGAGCTACGAGGCCGTCCTACATTGAATATGATGATTCCAATGAATGTATTTGAGGGATCTGCCAAGGATCATCACGGGAGAGGAACTGGTGGGGAAAGTGGTGATGAGGCCCTGGATGAGGATACTGATGGAAACAAAGAAGTCCAAGTGAAAGTTCTTGTGAAACGTGGGAACAAGCAACAGACAAAGCAGATGTACATCCCACGCAATTCGTCACTGGTGCAGAGTACAAAACAGAAAGAAGCAGCCGAACTTCAAGAGAAAGAAGATATTAAGAGGCTTGTCTTGGAGTATAATGATAGAGAAGAGGAGGAGCTTAATGGATTAGGGACCCAGCCAACAAACTGGATGCAGAGTGGGGGTTATAGGGGTGGTGGTCGTGGCTACACTTCAGAAGGAACCGGTGGCAGAAGTGGTGGATCACGCCATCGGCATCATTATCCCGGAAGTGGCTTCTACTATAGCAGAAGAAGGTAA 3627 0.4304 MDQHEDECRTGGESNSKQDDEEAVAHLEEIKKSIEAKIALRQSNLNPDRPDSGFLRTLDSSIKRNTAVIKKLKQINEELREALMDELRTVNMSKFVSEAVAAICDAKLRSSDIQAAVQICSLLHQRYKDFAPSLIQGLLKIFSPGKPGDESDTDKNLKAMKKRSSLKLLLELFFVGVIEDGAIFITIIKDLTSVEQLKDRDATQTSLTLLSSFARQGRIFLGLSVNGPEIHEEFFKGLAITADQKKVLRKACYAFYDAAAELLQSEHSSLRVMEHENSKILNAKGELSEENVASYEKLRKSYDHLYRNVSSLAEALDMQPPVMPEDGHTTRVTSGEEAISSASGKDSSVVEPIWDDEDTRAFYECLPDLRAFVPAVLLGETEPKSNEQSVKSQDQSTEILPESDKGQTTRESGEVSTDPSALPEGESIQGVKGKEEQEKSKELDREKEKDKEKDKDKDKEKDKDKEKEKEKDNDKKGENEKDKLRSLEGTNLDALLQRLPGCVSRDLIDQLTVEFCYLNSKSNRKKLVRALFSVPRTSLELLPYYSRMVATLSTCMKDVSSILLQMLEEEFNFLINKKDQMNIETKIKNIRFIGELCKFKIAPAGLVFSCLKACLDDFTHHNIDVACNLLETCGRFLYRSPETSIRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPERSARVAKVRPPLHQYIRKLLFSDLDKSTIEHVLRQLRKLPWSECEPYLLKCFMKVYKGKYGQIHLIASLAAGLSRYHDEFAVAIVDEVLEEIRIGLELNDYGMQQRRVAYMRFLGELYNYKHADSSVIFETLYLILVYGHGTPEQDVLDPPEDFFRIRLIITLLETCGHYFDHGSSKRKLDRFLIHFQRYILSKGALPLDVEFDLQDLFVDLRPNMVRYSSIEEVNAALVELEEHDRIVSADKASGEKQSEKPPRRTTSSMVVGNGQSIDNGAEDNGVQDDVNDGEADSGSDVIDEEGHDDDGLDEENHDDGSGTEDEDDDEGPGPASDEEDEVHVRQKVTEVDPLEEASFDQELKAVLQESMEQRRLELRGRPTLNMMIPMNVFEGSAKDHHGRGTGGESGDEALDEDTDGNKEVQVKVLVKRGNKQQTKQMYIPRNSSLVQSTKQKEAAELQEKEDIKRLVLEYNDREEEELNGLGTQPTNWMQSGGYRGGGRGYTSEGTGGRSGGSRHRHHYPGSGFYYSRRR* 1209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1886 1208 MobiDBLite consensus disorder prediction 316 346 - -
Lja6g1886 1208 PANTHER NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 UP-FRAMESHIFT SUPPRESSOR 2 1 1204 IPR039762 GO:0000184
Lja6g1886 1208 Coils Coil 564 584 - -
Lja6g1886 1208 MobiDBLite consensus disorder prediction 382 403 - -
Lja6g1886 1208 MobiDBLite consensus disorder prediction 1070 1084 - -
Lja6g1886 1208 SUPERFAMILY ARM repeat 691 916 IPR016024 -
Lja6g1886 1208 Pfam MIF4G domain 496 680 IPR003890 GO:0003723|GO:0005515
Lja6g1886 1208 Pfam MIF4G domain 698 891 IPR003890 GO:0003723|GO:0005515
Lja6g1886 1208 MobiDBLite consensus disorder prediction 959 1010 - -
Lja6g1886 1208 MobiDBLite consensus disorder prediction 1 23 - -
Lja6g1886 1208 SMART if4_15 696 897 IPR003890 GO:0003723|GO:0005515
Lja6g1886 1208 SMART if4_15 493 681 IPR003890 GO:0003723|GO:0005515
Lja6g1886 1208 SMART if4_15 62 284 IPR003890 GO:0003723|GO:0005515
Lja6g1886 1208 Coils Coil 433 453 - -
Lja6g1886 1208 PANTHER - 1 1204 - -
Lja6g1886 1208 MobiDBLite consensus disorder prediction 922 1033 - -
Lja6g1886 1208 MobiDBLite consensus disorder prediction 937 956 - -
Lja6g1886 1208 Pfam Up-frameshift suppressor 2 1011 1147 IPR007193 -
Lja6g1886 1208 MobiDBLite consensus disorder prediction 1011 1033 - -
Lja6g1886 1208 Coils Coil 17 37 - -
Lja6g1886 1208 MobiDBLite consensus disorder prediction 429 484 - -
Lja6g1886 1208 MobiDBLite consensus disorder prediction 922 936 - -
Lja6g1886 1208 MobiDBLite consensus disorder prediction 382 484 - -
Lja6g1886 1208 SUPERFAMILY ARM repeat 490 684 IPR016024 -
Lja6g1886 1208 Gene3D - 14 324 - -
Lja6g1886 1208 SUPERFAMILY ARM repeat 81 195 IPR016024 -
Lja6g1886 1208 Coils Coil 62 89 - -
Lja6g1886 1208 Gene3D - 445 690 - -
Lja6g1886 1208 MobiDBLite consensus disorder prediction 1154 1208 - -
Lja6g1886 1208 Gene3D - 691 921 - -
Lja6g1886 1208 MobiDBLite consensus disorder prediction 1190 1208 - -
Lja6g1886 1208 MobiDBLite consensus disorder prediction 1070 1092 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1886 K14327 - gmx:100786092 1980.68