Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1885 ATGGAAGGAGGTGTACCAGAAGCTGACATGTCTGCTTTCAGAGAATGTTTATCTCTTTCATGGAAAAACCCTTATGTTCTTCGCCTTGCTTTCTCTGCTGGAATCGGTGGCCTCCTCTTTGGCTACGATACCGGAGTTATATCTGGGGCTCTTCTGTATATCAGAGATGACTTCAAAGCAGTAGATAGAAAAACTTGGCTTCAGGAAGCCATAGTGAGTACAGCAATTGCTGGAGCAATCATAGGAGCTGCAGTTGGAGGATGGATCAATGACAGGTTTGGAAGGAGAGTAGCAATAATTATTGCAGATACCCTCTTTTTAATAGGGTCTGTAATCATGGCTGCTGCTCCAAATCCAGCTATTCTCTTATTTGGTAGAGTTTTTGTTGGATTTGGTGTTGGCATGGCTTCAATGGCTTCCCCTTTGTACATTTCTGAGGCTTCCCCAACTAGAGTGAGAGGAGCACTTGTCAGTCTCAACAGTTTTCTTATAACTGGAGGACAGTTCCTTTCCTACCTCATCAACTTGGCCTTCACTAATGCACCAGGGACATGGAGATGGATGTTAGGGGTAGCAGCAGCACCTGCTATAATACAAATTGTGCTGATGTTGTCACTCCCTGAGTCTCCTCGTTGGCTGTACCGGAAGGGTAGGGAGGAAGAATCAAAATCAATTCTGAAGAAGATTTACGCTCCAGAGGATGTTGACGCTGAAATTGAAGCGTTAAAGGAATCAGTTGAATCTGAAATTGAGGAATCAAAAACATCAAAGATAAGCATGATGACACTTTTGAAAACCACAACTGTTAGAAGAGGTCTTTATGCAGGGATGGGACTCCAATTCTTCCAGCAGTTTGTGGGAATCAACACTGTAATGTACTACAGTCCCACCATTGTTCAACTTGCTGGTTTTGCATCTAACAGGACAGCCCTGCTTCTGTCACTAATCACCTCTGGCCTAAATGCTTTTGGTTCCATTTTGAGCATATATTTCATTGACAAGACTGGCAGAAAAAAACTTGCCCTGATCAGTTTATGTGGTGTTGTGCTTTCCCTGGCTCTTCTTACTGTCGCTTTTCGTGAGAGTGAGCTTCATGCTCCAACAGTTAGTGCCATTGAAACCTCTCATTACAATAACACATGCCCTGATTTCAGAGCAGCTGTGAACCCTGGTAGATGGACTTGCATGACTTGCCTAAAGGCTTCACCATCTTGTGGTTTTTGTGCTGCTTCTCCTAACAAGCTCTTACCTGGGGCATGTTTGATTTCCGATGACACTACAAAGGATATGTGTGGAAATGATCACAGGGCATGGTACACTAGGGGATGTCCAAGTAAATTTGGTTGGGCTGCTCTAGTTGGGCTTGCTCTCTACATCATTACCTTCTCACCAGGGATGGGGACAGTTCCATGGGTTATCAACTCTGAGATCTATCCCTTGAGGTATAGAGGGGTTTGTGGAGGAATTGCATCCACCACTGTTTGGATTTCCAACTTAATTGTTTCACAGTCTTTTCTGTCCTTGACACAAACTATTGGGACAGCATGGACATTCATGATGTTTGGAATTTTGGCTGTTGTAGCCATTTTCTTTGTCATTGTTTTTGTGCCTGAGACCAAAGGGGTTCCAATGGAGGAAGTGGAGAAGATGCTGGAACAAAGATCTCTGCAGTTCAAGTTTTGGCAGAAGAGAGATTCTGGCTCTGAGAAGCACTAA 1716 0.4388 MEGGVPEADMSAFRECLSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKAVDRKTWLQEAIVSTAIAGAIIGAAVGGWINDRFGRRVAIIIADTLFLIGSVIMAAAPNPAILLFGRVFVGFGVGMASMASPLYISEASPTRVRGALVSLNSFLITGGQFLSYLINLAFTNAPGTWRWMLGVAAAPAIIQIVLMLSLPESPRWLYRKGREEESKSILKKIYAPEDVDAEIEALKESVESEIEESKTSKISMMTLLKTTTVRRGLYAGMGLQFFQQFVGINTVMYYSPTIVQLAGFASNRTALLLSLITSGLNAFGSILSIYFIDKTGRKKLALISLCGVVLSLALLTVAFRESELHAPTVSAIETSHYNNTCPDFRAAVNPGRWTCMTCLKASPSCGFCAASPNKLLPGACLISDDTTKDMCGNDHRAWYTRGCPSKFGWAALVGLALYIITFSPGMGTVPWVINSEIYPLRYRGVCGGIASTTVWISNLIVSQSFLSLTQTIGTAWTFMMFGILAVVAIFFVIVFVPETKGVPMEEVEKMLEQRSLQFKFWQKRDSGSEKH* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1885 571 Pfam Sugar (and other) transporter 30 359 IPR005828 GO:0016021|GO:0022857|GO:0055085
Lja6g1885 571 Pfam Sugar (and other) transporter 447 550 IPR005828 GO:0016021|GO:0022857|GO:0055085
Lja6g1885 571 PANTHER PROTON MYO-INOSITOL COTRANSPORTER 1 571 - -
Lja6g1885 571 CDD MFS_HMIT_like 32 538 - -
Lja6g1885 571 ProSiteProfiles Major facilitator superfamily (MFS) profile. 29 540 IPR020846 GO:0022857
Lja6g1885 571 SUPERFAMILY MFS general substrate transporter 18 549 IPR036259 -
Lja6g1885 571 TIGRFAM SP: MFS transporter, sugar porter (SP) family 20 362 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja6g1885 571 Gene3D MFS general substrate transporter like domains 430 559 IPR036259 -
Lja6g1885 571 Gene3D MFS general substrate transporter like domains 20 377 IPR036259 -
Lja6g1885 571 PRINTS Sugar transporter signature 283 293 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja6g1885 571 PRINTS Sugar transporter signature 37 47 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja6g1885 571 PRINTS Sugar transporter signature 475 487 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja6g1885 571 PRINTS Sugar transporter signature 123 142 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja6g1885 571 PRINTS Sugar transporter signature 452 473 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja6g1885 571 PANTHER GENERAL SUBSTRATE TRANSPORTER 1 571 - -
Lja6g1885 571 ProSitePatterns Sugar transport proteins signature 2. 128 153 IPR005829 GO:0016021|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1885 Lja-Chr6 46174439 46181180 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1885 1 571 Organic Solute Cotransporters AT1G30220 71.528 0.0 851
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1885 K08150 - gmx:100796800 949.503