Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1883 ATGGAAGGAGGAGTGCCAGAAGCTGATGTCTCTGCTTTCAGAGAATGTTTAGCTCTATCATGGAAAAATCCTTATGTTCTTCGTCTTGCTTTCTCTGCTGGAATTGGAGGCTTTCTTTTTGGCTATGACACTGGAGTCATATCTGGAGCTCTTTTGTATATAAGAGATGATTTCAAAGCTGTGGATAGAGAGACTTGGCTGCAGGAAGCCATAGTGAGCATGGCACTTGCTGGAGCAATCATAGGAGCCGCAGTTGGAGGATGGATTAACGACCGATTTGGAAGGAAAACAGCAATTCTCCTTGCAGACACACTCTTTTTCATTGGAGCGGTTGTGATGGCATCTGCTATGAATCCAGCTATTCTCATTGTTGGTAGAGTTTTTGTTGGACTTGGTGTTGGAATGGCTTCAATGGCATCCCCTTTGTACATCTCTGAAGCTTCTCCAACCAGAGTTCGTGGAGCACTTGTTAGTCTCAATGGATTTCTCATCACTGGAGGACAGTTCCTTTCCTATGTCATCAACTTGGCCTTCACAAGTGCACCAGGAACATGGAGGTGGATGTTAGGAGTTGCAGCAGTACCTGCTCTAACACAAATCATATTGATGCTTATGCTCCCAGAATCACCTCGTTGGCTATTCAGAAAGGGTAAAGAAGAACAGGCCAAAGAAATTCTAAGGAAGATTTACCCTCCCCAAGAAGTTGAAGATGAAATCATTGCTTTAAAGGAATCAGTTGACATGGAACTCAGGGAAGCTTCAGATAAAGTCAGCATAGTCAACCTTTTGAAAACCAAAACTGTGAGGAGAGGTTTATATGCAGGAATGGGAATTCAAATCTTCCAGCAGTTTGTGGGAATCAACACTGTGATGTACTACAGCCCCACCATTGTTCAATTAGCTGGCTTTGCATCCAATAGGGTTGCACTTCTTCTATCACTTGTCATAGCTGGGTTGAATGCATTTGGTTCCATTTTGAGCATTTACTTCATTGATAAGACTGGGAGGAGGAAGCTTCTGCTGATAAGTTTGTCTGGTGTTGTGGTCTCCCTTGTTGTTTTAACTGTTGTGTTCCATCAGACTACAACTCACACTCCAATGATCAGCTCCATTGAAACTTCTCACTTCAATAACACATGCCCTGATTATAGGGCAGCTTTGAACCCTGGTGAATGGGATTGCATGCAATGCCTAAAGTCTTCTCCTGAGTGTGGCTTTTGTGCTTCAGCAGATAATAAGCTATTACCTGGGGCATGCTTGATTTCCAATGACACAACAGAAGATCAGTGCCACAATGAACACAGGCTATGGTACACAAGGGGATGCCCTAGCAAAAATGGATGGCTTGCACTAATTGGCTTGGGACTTTACATCTTATTCTTCTCACCAGGAATGGGAACTGTTCCATGGGTTATAAACTCTGAGATATATCCTTTGAGATACAGAGGAATCTGTGGAGGAATGGCATCTACCTCAAATTGGGTTTCAAATCTCATTGTTGCACAGTCCTTTCTGTCCTTGACAGAAGCTATAGGGATTTCATCCACATTCATGATATTTATATTCATCACCGTCGCGGCGATCGTCTTTGTGATTGTTGTCGTGCCAGAAACCAAAGGACTTCCAATTGAGGAGGTAGAGAACATGCTTGAAAGAAGGTCTCTGAACTTCAAGTTTTGGCAAAGAAGTTCTGACTCTGGTCAAGTAGATGCACAAAAGACTATCTCACTTTGA 1734 0.4302 MEGGVPEADVSAFRECLALSWKNPYVLRLAFSAGIGGFLFGYDTGVISGALLYIRDDFKAVDRETWLQEAIVSMALAGAIIGAAVGGWINDRFGRKTAILLADTLFFIGAVVMASAMNPAILIVGRVFVGLGVGMASMASPLYISEASPTRVRGALVSLNGFLITGGQFLSYVINLAFTSAPGTWRWMLGVAAVPALTQIILMLMLPESPRWLFRKGKEEQAKEILRKIYPPQEVEDEIIALKESVDMELREASDKVSIVNLLKTKTVRRGLYAGMGIQIFQQFVGINTVMYYSPTIVQLAGFASNRVALLLSLVIAGLNAFGSILSIYFIDKTGRRKLLLISLSGVVVSLVVLTVVFHQTTTHTPMISSIETSHFNNTCPDYRAALNPGEWDCMQCLKSSPECGFCASADNKLLPGACLISNDTTEDQCHNEHRLWYTRGCPSKNGWLALIGLGLYILFFSPGMGTVPWVINSEIYPLRYRGICGGMASTSNWVSNLIVAQSFLSLTEAIGISSTFMIFIFITVAAIVFVIVVVPETKGLPIEEVENMLERRSLNFKFWQRSSDSGQVDAQKTISL* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1883 577 Pfam Sugar (and other) transporter 444 549 IPR005828 GO:0016021|GO:0022857|GO:0055085
Lja6g1883 577 Pfam Sugar (and other) transporter 30 364 IPR005828 GO:0016021|GO:0022857|GO:0055085
Lja6g1883 577 PRINTS Sugar transporter signature 451 472 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja6g1883 577 PRINTS Sugar transporter signature 123 142 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja6g1883 577 PRINTS Sugar transporter signature 474 486 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja6g1883 577 PRINTS Sugar transporter signature 37 47 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja6g1883 577 PRINTS Sugar transporter signature 282 292 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja6g1883 577 SUPERFAMILY MFS general substrate transporter 19 547 IPR036259 -
Lja6g1883 577 Gene3D MFS general substrate transporter like domains 432 557 IPR036259 -
Lja6g1883 577 PANTHER PROTON MYO-INOSITOL COTRANSPORTER 1 564 - -
Lja6g1883 577 TIGRFAM SP: MFS transporter, sugar porter (SP) family 21 364 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja6g1883 577 CDD MFS_HMIT_like 32 524 - -
Lja6g1883 577 Gene3D MFS general substrate transporter like domains 21 375 IPR036259 -
Lja6g1883 577 ProSiteProfiles Major facilitator superfamily (MFS) profile. 29 539 IPR020846 GO:0022857
Lja6g1883 577 ProSitePatterns Sugar transport proteins signature 2. 128 153 IPR005829 GO:0016021|GO:0022857|GO:0055085
Lja6g1883 577 PANTHER GENERAL SUBSTRATE TRANSPORTER 1 564 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1883 Lja-Chr6 46115490 46121398 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1883 1 565 Organic Solute Cotransporters AT1G30220 71.629 0.0 846
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1883 K08150 - gmx:100783605 980.704