Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1857 ATGGCGAAATTGAAGATTGCAGGAACATGGTCAGGGATTCTCGAAGACGTAGAGTTGGAGGCTTGGACAATCGAAACGCTGCGTGAAGAGGTTGCAAAGCGATCAAACTGTGCCGCTAACTCCATCAATCTCATCTGCGCCGGGAAGATTCTCAAGGACGCCGCCGATGGAACCCAAAACCTCGCCCAATTGGGTCTCAAGAACAACTCTAAGATCCTCGCTTCTCGCCTCGCCGATCAAACATTCATCGCTGAAGAAGAACGCTCTCGGAGGCTTGCCCGTATCAGGACTGCTGTGTCTTCAATGGCTGAAAGGCATGCAGATGGTTCACTACCTCTTGAGGACTTCAACATAGAAGTTGAAGATCAAAGTGGGAAGAAAGTACGTTTGGGATCTGAGACTGATCAGAGGGCAGTAATGATGGGATTGATGCTTCATGCAAAGGGGAAGCGTCTTATCAGACAGGGAAATTACAAAGATGCACTTGAAGTGCTTATCATGGGAGAGGAGTCATTCTCTCTTTGTGATCCAAAAGTCATTGAGCTGATTGACAATGTTCCAATACTGCAAATAGACATGGTGTGGTGCTACTTTATGATACGAGACATCCGATGGCTCTCAGATGCAGGAAAGCGTCTTGAAATGGCCAGGGCAGGAATTGAACGTGCTCATGGGAAGGATTCTCTCCGCCTCAGAATCTTACAAGGAGGTTGCTATCCAGAACTTGCATTGCATTTGAGGATGGAGCTGCTTGAAGGGGTGGTGGCATATCATACTGGCCAATTGGAGAAGTCAAGAAATGTATTAGCTTCTGCAAGAGCAAAGTTTGCCCAGCTGCAAGTGCCAGATGAAGCCTTATCACTTGTTATGAGCATGGGCTTCAAAGAACGTGGTGCAAAGAGAGCATTGCGAATGAACAATCAAGATGTTGGGAGTGCCATTGATTTCCTTGTTGCAGAGAAGGCAAAGAAAATGCAAAAACGGGAGGAAGATATTCGGAGAAGAAATGAAATTAGGGAACAAAAGAGTTATGGAATGACACCCTCAAAGAAAGCTGTGGATATAGATAGATTGAAGGAATTGGTCTCTATTGGGTTTGAAAAGGAACTAGCTGCTGAAGCCCTGAGAAGAAATGAAAATGATACTCAGCAGGCATTAGATGATTTGACAAATCCAGAAACAAATTCAGCTTTGCAGGATAATATCGAGTCAAGGAAAAGGAAGAGACAAAAACAAGAAACAGATTCTGCAATTGAAAATGTTGTGCAAATGGGTTTTGAAAGATCTAGAGTTGTTGCTGCTTTTGAGGCGGGTGGCAATTTAGAACAAGTTCTGCAAAGACTGACGGCACTACCTGAGGCGGGTAGCACTTCTGAAAATATCCAGCCTCAAGTTAACTCTAGTGTTGCTCCCAATGGCAGTGCAAGTTCATCTGCTCCTCTACCAGATGATGTTATTTCTGATGTTCTAGACCAAATGAATGAGGTTGAAGATCCATCCGTCGCAGAAGAACGAGATGTGGAGATGGAAGATGAGCTCTCTGCAGATATAGCAAAATCTGATGCATTGGATGATTATGACATTGAAGTTGACATAGAAGGGCAAGCCATAACTGAGTACCTGACTCTGCTTGAGTCTTCAAGCAGCAGTGGGAAAGTGGTTCCTTCCCAATAA 1674 0.4462 MAKLKIAGTWSGILEDVELEAWTIETLREEVAKRSNCAANSINLICAGKILKDAADGTQNLAQLGLKNNSKILASRLADQTFIAEEERSRRLARIRTAVSSMAERHADGSLPLEDFNIEVEDQSGKKVRLGSETDQRAVMMGLMLHAKGKRLIRQGNYKDALEVLIMGEESFSLCDPKVIELIDNVPILQIDMVWCYFMIRDIRWLSDAGKRLEMARAGIERAHGKDSLRLRILQGGCYPELALHLRMELLEGVVAYHTGQLEKSRNVLASARAKFAQLQVPDEALSLVMSMGFKERGAKRALRMNNQDVGSAIDFLVAEKAKKMQKREEDIRRRNEIREQKSYGMTPSKKAVDIDRLKELVSIGFEKELAAEALRRNENDTQQALDDLTNPETNSALQDNIESRKRKRQKQETDSAIENVVQMGFERSRVVAAFEAGGNLEQVLQRLTALPEAGSTSENIQPQVNSSVAPNGSASSSAPLPDDVISDVLDQMNEVEDPSVAEERDVEMEDELSADIAKSDALDDYDIEVDIEGQAITEYLTLLESSSSSGKVVPSQ* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1857 557 MobiDBLite consensus disorder prediction 384 399 - -
Lja6g1857 557 MobiDBLite consensus disorder prediction 400 415 - -
Lja6g1857 557 MobiDBLite consensus disorder prediction 455 484 - -
Lja6g1857 557 Coils Coil 395 415 - -
Lja6g1857 557 MobiDBLite consensus disorder prediction 384 416 - -
Lja6g1857 557 ProSiteProfiles Ubiquitin domain profile. 23 72 IPR000626 GO:0005515
Lja6g1857 557 Gene3D - 15 82 - -
Lja6g1857 557 SUPERFAMILY UBA-like 352 392 IPR009060 GO:0005515
Lja6g1857 557 SUPERFAMILY UBA-like 397 448 IPR009060 GO:0005515
Lja6g1857 557 CDD UBA 358 387 - -
Lja6g1857 557 SUPERFAMILY Ubiquitin-like 21 73 IPR029071 -
Lja6g1857 557 PANTHER NEDD8 ULTIMATE BUSTER-1 BS4 PROTEIN 21 547 IPR039749 -
Lja6g1857 557 SUPERFAMILY UBA-like 274 320 IPR009060 GO:0005515
Lja6g1857 557 SMART uba_6 414 450 IPR015940 -
Lja6g1857 557 SMART uba_6 282 319 IPR015940 -
Lja6g1857 557 SMART uba_6 354 391 IPR015940 -
Lja6g1857 557 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 280 320 IPR015940 -
Lja6g1857 557 MobiDBLite consensus disorder prediction 455 481 - -
Lja6g1857 557 Gene3D - 355 392 - -
Lja6g1857 557 Gene3D - 282 321 - -
Lja6g1857 557 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 352 392 IPR015940 -
Lja6g1857 557 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 410 437 IPR015940 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1857 - - gmx:100792972 836.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1857 6 45907431 45913244 Lja6g1857 6 45907431 45913244 ECH