Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1836 ATGGCAGGTGGGTTCACAACAGGTTCTGCTGTGGGCAAGGAGAGAGCAGAACAGTATAAGGGGAGAGTCACTGCTTATGTCATCATCGCCTGTGTTGTTGCTGCCACAGGAGGGTCTCTCTTTGGATATGATATTGGGATTTCAGGTGGGGTTACTTCCATGGATGATTTTCTTGAAGATTTCTTCCCCTCAGTGTACAGAAGCAAAATGCATGCACATGAAAACAATTACTGCAAGTATGACAATCAGGGCCTTGCAGCATTCACCTCATCTCTTTACATTGCTGGTTTAATTGCATCCCTGGTGGCTTCTCCCATTACAAGGAAGTACGGACGTCGAGCGAGTATCATTGGTGGTGGTATCAGCTTCCTAATTGGATCTGCTCTGAACGCTTCAGCTGTTAACCTGGAAATGCTGATCTTCGGCCGGGTCATGCTTGGTATTGGCATTGGATTTGGGAACCAGGCTGTTCCTCTTTATTTGTCAGAGATGGCACCAACCCATCTTCGAGGAGGCGTGAACATGATGTTTCAAGTGGCAACAACTTTTGGGATTTTCACAGCCAACATGGTCAACTATGGAACACAGAAGATTAGACCTTGGGGGTGGAGGCTATCCCTAGGCTTGGCTGCAATACCAGCTCTTTTGATGACTGTAGGAGGGTTATTTCTTCCTGAAACTCCCAATAGCTTAATTGAAAGAGGATCAAAAGAAACAGGAAGGAAGCTCCTAGAAAAAATCAGAGGGACTGAAGAGGTTGATGCAGAGTTTCAAGACATGGTTGATGCAAGTGAGTTGGCAAACTCTATAAAGCACCCGTTTCGTAACATCCTTGAAAGAAGGTACAGGGCGGAGTTGGTGATGGCAATCTTCATGCCTACCTTCCAGATCTTGACTGGCATAAACTCCATTCTGTTCTATGCTCCAGTGCTGTTTCAAACCATGGGATTCGGAAGGGATGCTTCTCTATACTCTTCAGCTGTGACAGGAGGGGTTCTTGCTTCTTCCACATTCATTTCCATTGCAACAGTTGACAAGTTGGGCAGGAGAGCTCTTCTCATCAGCGGTGGAATACAAATGATCACATGTCAGGTTATAGTTGCCATCATTTTGGGGATCAAGTTTGGAGACACCCAAGAATTGTCCAAAAGCTTTTCTATATTGGTTGTGGTTTTTATTTGCCTATTTGTTCTAGCTTTTGGATGGTCATGGGGGCCACTTGGGTGGACAGTTCCTAGTGAGATATTTCCATTAGAAATCAGGTCAGCAGGGCAAAGCATCACAGTTGCTGTGAACCTTCTGTTCACTTTCATAATTGCCCAGTCTTTCCTTGCTCTTCTCTGCTCATTCAAGTTTGGGATCTTTCTCTTTTTTGCTGGCTGGATTACAATCATGACCATATTTGTTTCTCTTTTCCTACCTGAAACAAAGGGGATTCCCATTGAAGAGATGTCATTTATGTGGAGGAAGCACTGGTTCTGGAAAATGATACTGCCTGAAACCGATGGTGGTAGGGTATAA 1521 0.4477 MAGGFTTGSAVGKERAEQYKGRVTAYVIIACVVAATGGSLFGYDIGISGGVTSMDDFLEDFFPSVYRSKMHAHENNYCKYDNQGLAAFTSSLYIAGLIASLVASPITRKYGRRASIIGGGISFLIGSALNASAVNLEMLIFGRVMLGIGIGFGNQAVPLYLSEMAPTHLRGGVNMMFQVATTFGIFTANMVNYGTQKIRPWGWRLSLGLAAIPALLMTVGGLFLPETPNSLIERGSKETGRKLLEKIRGTEEVDAEFQDMVDASELANSIKHPFRNILERRYRAELVMAIFMPTFQILTGINSILFYAPVLFQTMGFGRDASLYSSAVTGGVLASSTFISIATVDKLGRRALLISGGIQMITCQVIVAIILGIKFGDTQELSKSFSILVVVFICLFVLAFGWSWGPLGWTVPSEIFPLEIRSAGQSITVAVNLLFTFIIAQSFLALLCSFKFGIFLFFAGWITIMTIFVSLFLPETKGIPIEEMSFMWRKHWFWKMILPETDGGRV* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1836 506 CDD MFS_STP 33 475 IPR044778 GO:0015145|GO:0015749
Lja6g1836 506 Gene3D MFS general substrate transporter like domains 19 491 IPR036259 -
Lja6g1836 506 PRINTS Sugar transporter signature 390 411 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja6g1836 506 PRINTS Sugar transporter signature 413 425 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja6g1836 506 PRINTS Sugar transporter signature 38 48 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja6g1836 506 PRINTS Sugar transporter signature 140 159 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja6g1836 506 PRINTS Sugar transporter signature 296 306 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja6g1836 506 PANTHER - 8 500 - -
Lja6g1836 506 TIGRFAM SP: MFS transporter, sugar porter (SP) family 22 484 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja6g1836 506 Pfam Sugar (and other) transporter 31 488 IPR005828 GO:0016021|GO:0022857|GO:0055085
Lja6g1836 506 ProSiteProfiles Major facilitator superfamily (MFS) profile. 30 477 IPR020846 GO:0022857
Lja6g1836 506 SUPERFAMILY MFS general substrate transporter 21 484 IPR036259 -
Lja6g1836 506 ProSitePatterns Sugar transport proteins signature 1. 340 357 IPR005829 GO:0016021|GO:0022857|GO:0055085
Lja6g1836 506 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 8 500 IPR045262 GO:0015144
Lja6g1836 506 ProSitePatterns Sugar transport proteins signature 2. 145 170 IPR005829 GO:0016021|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1836 Lja-Chr6 45725978 45729434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1836 1 500 Organic Solute Cotransporters AT4G02050 79.600 0.0 843
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1836 K24193 - gmx:100820434 877.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1836 6 45725978 45729434 Lja6g1836 6 45725978 45729434 ECH