Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1451 ATGGAGGACCGCACCAAACAAGACAGTGAAGAAACCAATGGCAGTTCTGTCCTATCTCACCGACCCGATTCATTTGGCCGGTATGGTCGGTTTGGTGGCAAGTATGTCCCTGAAACTCTCATGCATGCAATCACTGAGCTAGAGGCAGCGTTCCATTCCCTTGCTCATGATGAAGCCTTCCAGAAAGAGCTTGGTGGGATACTGAGGGACTATGTGGGTAGGGAGAGCCCACTTTACTTTGCTGAGAGACTGACTGAGCACTACAGGCGTGGTGATGGGGAAGGGCCTCATGTGTATCTGAAGAGGGAGGATCTCAACCACACTGGTGCTCATAAGATTAATAATGCTGTTGCTCAGGCTTTGCTTGCCAAGAGGTTGGGGAAGAAGAGGGTTATTGCTGAGACTGGTGCTGGGCAGCATGGAGTTGCTACTGCCACTGTGTGTGCTCGGTTCGGGTTGGAATGTGTTGTTTATATGGGTGCTCAGGATATGGAAAGGCAGTCCCTTAATGTTTTCAGAATGCGTCTACTTGGTGCTGAGGTGAGAGCAGTACATTCTGGGACTGCTACGCTGAAGGATGCTACGTCAGAAGCTATAAGGGATTGGGTGACTAATGTGGAGACAACACATTATATTTTGGGTTCGGTTGCGGGACCACATCCGTATCCTATGATGGTAAGAGAGTTTCAAGCCGTGATTGGCAAAGAAACAAGAAAGCAAGCATTGGAGAAATGGGGAGGGAAGCCAGATATTCTGGTAGCATGTGTTGGTGGTGGTTCGAATGCGATGGGACTTTTCCATGAATTTATCGATGACAAAGATGTTAGGCTGATTGGAGTGGAGGCTGCTGGGTTGGGCCTAGAAAGCGGTAAGCATGCCGCTACATTAACAAAAGGAGAGATCGGAGTTTTGCATGGAGCAATGAGCTATCTTTTGCAAGATGATGATGGGCAAATAATTGAGCCTCACTCTATTAGTGCAGGGTTGGACTACCCTGGGGTTGGACCAGAGCATAGCTTCTTGAAAGATGTAGGGCGGGCTGAATACTACAGTGTTACTGATGAAGAAGCACTAGAAGCTTTTAAAAGACTGTCCCAGCTGGAAGGCATAATTCCAGCTTTGGAGACATCTCATGCTTTGGCTTATTTAGAGAAGCTCTGTCCTACCCTTCCGAATGGAACTAAGGTTGTGGTTAACTGCAGTGGCAGAGGGGATAAGGATGTTCAAACTGCTTCCAAGTACTTCAATGTTTGA 1254 0.4777 MEDRTKQDSEETNGSSVLSHRPDSFGRYGRFGGKYVPETLMHAITELEAAFHSLAHDEAFQKELGGILRDYVGRESPLYFAERLTEHYRRGDGEGPHVYLKREDLNHTGAHKINNAVAQALLAKRLGKKRVIAETGAGQHGVATATVCARFGLECVVYMGAQDMERQSLNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVREFQAVIGKETRKQALEKWGGKPDILVACVGGGSNAMGLFHEFIDDKDVRLIGVEAAGLGLESGKHAATLTKGEIGVLHGAMSYLLQDDDGQIIEPHSISAGLDYPGVGPEHSFLKDVGRAEYYSVTDEEALEAFKRLSQLEGIIPALETSHALAYLEKLCPTLPNGTKVVVNCSGRGDKDVQTASKYFNV* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1451 417 PIRSF Trp_syn_beta 6 417 IPR023026 GO:0000162|GO:0004834
Lja6g1451 417 ProSitePatterns Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 105 119 IPR006653 GO:0004834|GO:0006568
Lja6g1451 417 Gene3D - 28 230 IPR036052 -
Lja6g1451 417 PANTHER TRYPTOPHAN SYNTHASE BETA CHAIN 1, CHLOROPLASTIC-RELATED 8 417 - -
Lja6g1451 417 CDD Trp-synth_B 43 410 IPR006654 GO:0004834|GO:0006568
Lja6g1451 417 Pfam Pyridoxal-phosphate dependent enzyme 73 402 IPR001926 -
Lja6g1451 417 Gene3D - 73 408 IPR036052 -
Lja6g1451 417 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 22 414 IPR036052 -
Lja6g1451 417 MobiDBLite consensus disorder prediction 1 21 - -
Lja6g1451 417 PANTHER TRYPTOPHAN SYNTHASE-RELATED 8 417 - -
Lja6g1451 417 TIGRFAM trpB: tryptophan synthase, beta subunit 26 414 IPR006654 GO:0004834|GO:0006568
Lja6g1451 417 Hamap Tryptophan synthase beta chain [trpB]. 21 415 IPR023026 GO:0000162|GO:0004834
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1451 Lja-Chr6 40247815 40251280 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1451 K01696 - pda:103703474 752.281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1451 6 40247815 40251280 Lja6g1451 6 40247815 40251280 ECH