Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1386 ATGGTTCAGATCGCGAGGAGGAAGAAGGGACGGCCGTCGAAGGCGGATCTGGCCGCCCGTCGCGCCGCTCAGTCACCGGAAACCGCGGAGGAGCAGCATGACATCCGTCGGAGCCTCCGCCGCCGGAACGTCAGGTACAACATCATCGACTACGATGACGATTACGTCGACGAGGAGGACGAGAGGAGGCGCGAGAAGAAGAAGCTCAAGCTAATGGCCAAGCTGAACCAGGGCGAAGATGAAGAAGAAGGAGGGGAGTGGGAGGCGCGTGAGGATCACTCGCCAGAGGAGGAACAACAGAACGGCGGCGAATTCGATGTGGAAGAGAAACATAAAGAAACAGAAGCGGAAGACAGTGTGGTAAAGGGTAGAAAAGTGGATTTGAAAGGGCTCCACTCTGTTTCTGTTTCAGGAGCTCCTGCAAATACTGCATCTGGGATTCCATTGCCTGATCAGAAGACTCTGGAATTGATTCTTGACAAGCTTCAGAAGAAGGACAGGTATAGCGTATTTGCAGAGCCGGTTGATCCGGAAGAGCTTCCTGATTATCATGACGTGATTGAGCATCCCATGGACTTCACCACCCTGAGGAAGAAGTTGGCAAATGGATCTTATTCTACATTGGAACAATTTGAGAGTGATGTTTATTTAATTAGCTCAAATGCAATGCAATACAATGCACCAGAGACTGTATACTACAAACAGGCGCGGTCAATACAAGGACTAGCGCAGAAGAAGTTTGAGAAGTTAAGGATTGACTCTGAATGCTCTCAGATTGAGCTGAAGTCGGAGCAAAACATGCGACCTAATTCTCTGGTTAAGAAGCTAGTAAAGAAGCCACTGGGTTGTGCTTCACAGGAACCTGTTGGCTCTGATTTCTCCTCAGGGGCCACTCTTGCGACTATTGGAGATGTGCAGCCAATTTTTCATCCAATGCAACATGTTAGCTATGGGAGGTCTGGCAACTTTGATGGTATCATAGAGGGGAATACTTTCTTCATCGATGCAAATCAAGAGAAAGCTGAGGACGTTTTGTCAGGGAAGGGCCTGCTCTCTAAATTGGGAAGGAAGTCCTTTGTGCTTGATGACAATCGTCGTGCATCTTATAATATGTCTATGCAACCAATTACTAGATCAGATTCAGTATTTATGTCCTTTGAGAGTGGAATGAAGCAGCTGGTTACTGTTGGGCTTCATGCCGAATATTCTTATGCTAGGAGTTTGGCTCGTTTTAGTGCTTCTCTAGGACCCATTGCTTGGAAAATTGCTTCCCACAGGATTCAACAGGTACTGCCAGCTGGCTCTAAATTTGGTCGTGGCTGGGTTGGAGAGTTTGAACAGCTTCCAACCCCAAATTTTGTGCACCATAATGATAATGATGTTCGAAAAGAAACTAGTTTGGTTGCGAAGTTGCATTCCCCTGCTGAACTTCCGAAGTGTGACAAAAACTGTAAGAGTGTGGAGTCCACCATTGAACATCCTGTTAATGGACAGATGCTTGAGGGAAAACATCCGGCACTTGGTCCTACTAGTGGGCTTGCACCGGGAGGAAATCCTGTTATGTTTGGGTCTGTAGGAGTTAGACCCAATGCTCCTGTAAACCCTCTAAATCAGCAGCAGAATGTCCAATCCAGGAACTTTGGAAAGTTTGAGAATAATAGTTTGGACAAAGTGGAGTCGAATTCTGTACCCTCAATTAACCAGAATAATTCCAGTTTGGTTACAAACTTTGCATGTAACATTCCTACAGCTAATGCTCCTACTGAAGATTCTAAGCCCAAAGAGATGGTGTCAGGGAGCATGAATGCTTTGCCATCTACGCCTTTCAAGCAGCCAGATACTAATGGAGTTGTTGGTGGAGAGTTGCATAATGGAAAAGTCACCAATAGTTTGAATAGACAGGTGACTGGTCCATCATCTGAAACTATATCAAGCCAAACAGGAAGAGCTACTCGTTTTTCTGTTCATGGGCAGGACCAGGGTCTCAGTAACCCAGTCCAGTCGATGAGAATGTTCACTGAAAAGGCTCAAAAGCAGCAGACTTCTAACCATTCAGCAGTTGATACTTCACCAATGACATCATCAACTCCATCTGGACAAAGAGATGACTCGAGCAATGCTTCATCAGAAGCTGCTCGTGGGTGGACGTCTGTAGCGGTGGGAGGGTTCAAACAAGAACCTGACCATTCTAGTTCACCCAAGAATCAGATTTCTGCAGATTCTTTGAAAAACCAAACTAGGGAGTTCCATCAGCATCTTTCACGAAATCGGGGGGAGTTTTCTTCTGGTGGAATGTCTGTCCAGTATGATAAGAACAACTTCCCATTTCAAGCCTTTGTACCTCAACCTATTCAACCAGGTGCTGTTTCTCAGTTTCCAAACCAACAAATGGTTTCCCCTAAATTAGCATCTGCTGACCAAACTAGGTTTCAAATGCAGTCCCCTTGGCGAGGTCTGAGTCCTCAAGGCCAGCAGGCCCAGCAGAAACAAGAAACCCTTCCGCCTGATTTGAATATTGGTTGTCAGTCTCCAGGGTCACCTGGGAAACAATCACAGCAACCGGACCTAGCTTTGCAACTATGA 2583 0.4642 MVQIARRKKGRPSKADLAARRAAQSPETAEEQHDIRRSLRRRNVRYNIIDYDDDYVDEEDERRREKKKLKLMAKLNQGEDEEEGGEWEAREDHSPEEEQQNGGEFDVEEKHKETEAEDSVVKGRKVDLKGLHSVSVSGAPANTASGIPLPDQKTLELILDKLQKKDRYSVFAEPVDPEELPDYHDVIEHPMDFTTLRKKLANGSYSTLEQFESDVYLISSNAMQYNAPETVYYKQARSIQGLAQKKFEKLRIDSECSQIELKSEQNMRPNSLVKKLVKKPLGCASQEPVGSDFSSGATLATIGDVQPIFHPMQHVSYGRSGNFDGIIEGNTFFIDANQEKAEDVLSGKGLLSKLGRKSFVLDDNRRASYNMSMQPITRSDSVFMSFESGMKQLVTVGLHAEYSYARSLARFSASLGPIAWKIASHRIQQVLPAGSKFGRGWVGEFEQLPTPNFVHHNDNDVRKETSLVAKLHSPAELPKCDKNCKSVESTIEHPVNGQMLEGKHPALGPTSGLAPGGNPVMFGSVGVRPNAPVNPLNQQQNVQSRNFGKFENNSLDKVESNSVPSINQNNSSLVTNFACNIPTANAPTEDSKPKEMVSGSMNALPSTPFKQPDTNGVVGGELHNGKVTNSLNRQVTGPSSETISSQTGRATRFSVHGQDQGLSNPVQSMRMFTEKAQKQQTSNHSAVDTSPMTSSTPSGQRDDSSNASSEAARGWTSVAVGGFKQEPDHSSSPKNQISADSLKNQTREFHQHLSRNRGEFSSGGMSVQYDKNNFPFQAFVPQPIQPGAVSQFPNQQMVSPKLASADQTRFQMQSPWRGLSPQGQQAQQKQETLPPDLNIGCQSPGSPGKQSQQPDLALQL* 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1386 860 MobiDBLite consensus disorder prediction 624 712 - -
Lja6g1386 860 MobiDBLite consensus disorder prediction 800 860 - -
Lja6g1386 860 ProSitePatterns Bromodomain signature. 169 225 IPR018359 -
Lja6g1386 860 MobiDBLite consensus disorder prediction 74 124 - -
Lja6g1386 860 MobiDBLite consensus disorder prediction 88 124 - -
Lja6g1386 860 PRINTS Bromodomain signature 180 196 IPR001487 GO:0005515
Lja6g1386 860 PRINTS Bromodomain signature 166 179 IPR001487 GO:0005515
Lja6g1386 860 PRINTS Bromodomain signature 214 233 IPR001487 GO:0005515
Lja6g1386 860 PRINTS Bromodomain signature 196 214 IPR001487 GO:0005515
Lja6g1386 860 Pfam Bromodomain 157 237 IPR001487 GO:0005515
Lja6g1386 860 CDD Bromodomain 151 247 - -
Lja6g1386 860 Gene3D - 150 271 IPR036427 GO:0005515
Lja6g1386 860 SUPERFAMILY Bromodomain 142 250 IPR036427 GO:0005515
Lja6g1386 860 SMART bromo_6 144 252 IPR001487 GO:0005515
Lja6g1386 860 MobiDBLite consensus disorder prediction 625 712 - -
Lja6g1386 860 PANTHER DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN 1 860 - -
Lja6g1386 860 ProSiteProfiles Bromodomain profile. 163 233 IPR001487 GO:0005515
Lja6g1386 860 PANTHER BROMODOMAIN CONTAINING PROTEIN 1 860 - -
Lja6g1386 860 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1386 Lja-Chr6 39213752 39220035 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1386 K22184 - gmx:100792844 991.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1386 6 39213752 39220035 Lja6g1386 6 39213752 39220035 ECH
Lja6g1386 6 39213752 39220035 Lja6g1386 6 39213752 39220035 PCT