Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1348 ATGGAGATTGACACAACCCCAATTGATTTATGCTCCAAGGAACACCTCGACCTTTATCAAGAGTGGTTTAATTATGCAGATGCAGATGGTGATTGTCGTTTTACCGGGAATGAAGCCACCAAGTTTTTTGCCATGTCGAACTTGTCCCGACAAGATCTTAAGCAGGTGTGGGCTATTGCAGATTCAAAGAGAGAAGGATATCTTGGTATCAAAGAATTTGTCATTGCAATGCAGCTAATTTCTCTGGGACAAGCTGGACACCCAATAACACATGATCTTTTGACTAGTGATGTTTTGAAAAACGCTAAACCACCCACAATGGAGGGTTTGGATAAATTAATTGCAAAAAAGCGCAAACATAAAGACAAAGATCATGGTAGCACACTGTCATCATCTTCAAGTAATTGGTTTAATGCAAAGTCAACAAAAAAGATACCTGAGTCCTCTGTGACATCAGTTACCGATGGTTTGAAGAGACTCTACATTAAGAAGTTGAAGCCTTTAGAAGTTACTTACAACTTTAATGATTTTGTATCTCCTTTATTGACAAATAGTGATTTCGATTACAAACCTATGGTTCTGCTTTTGGGTCAATACTCAACTGGGAAAACAACATTTATTAAACATATGCTTAAAAGTGATTATCCAGGAGCTCATATTGGACCTGAGCCAACAACAGATAGGTTTGTTGTTGTCATGTCTGGACCTGATGAGAGAAGTATTCCTGGTAATACTGCTGCTGTCCAAGCAGATTTACCATTTGGTGGTCTTACAAAATTTGGCACATCTTTTTTGTCCAAATTTGAGTGTTCTCAAATGCCTCATCCTCTACTGGAGCATATTACCTTTGTGGACAGTCCTGGAGTTCTATCAGGAGAAAAGCAGCGGACGGAAAGATCATATGATTTTACCGGTGTAACATCTTGGTTTGCTGCTAAGAGTGATTTAATACTCCTTATGTTTGATCCTCACAAACTTGATATCAGCGATGAGTTCAAGCGTGTGATAGCATCCCTACGAGGCCATGATGATAAAATTCGAGTTGTTTTGAACAAGGCAGACCAAGTTGATACTCAACAACTAATGAGGGTATATGGTGCACTAATGTGGTCACTTGGGAAGGTGCTGAATACTCCTGAAGTCATGCGTGTATATATTGGCTCCTTCAATGACAAGCCTTTAAATGATGCTATTAGTGGTCCACTTGGCAGTGAACTCTTCGAAAAAGAACAGGAAAACCTTCTTTCAGATCTCAAAGATATACCTAAAAAGGCCTGTGATCGAAAAATCAATGAATTTGTAAAACGAGCCCGAGCTGCGAAGATACATGCTTGTATCATCAGCCATCTGAAAAAGAAGATGCCTGCCATGATGGGGAAAGCTAAAGCTCAGCAAAAGCTTATTGATAATTTGGAGGATGAATTTGCAAAGGTACAAAAGGAGTTCCATCTACCAGCTGGAGACTTCCCAAATGTTGATCACTTCAAGGAGACCTTGAATGGTTACAACATTGGCAAATTTGAGAAATTGAAACCAAAGATGACACAATCTGTGGATGACATGCTTGCTTACGACGTTCCTAACCTCTTAAAGACTTTCAGAAATCCCTATGGTTAA 1617 0.3939 MEIDTTPIDLCSKEHLDLYQEWFNYADADGDCRFTGNEATKFFAMSNLSRQDLKQVWAIADSKREGYLGIKEFVIAMQLISLGQAGHPITHDLLTSDVLKNAKPPTMEGLDKLIAKKRKHKDKDHGSTLSSSSSNWFNAKSTKKIPESSVTSVTDGLKRLYIKKLKPLEVTYNFNDFVSPLLTNSDFDYKPMVLLLGQYSTGKTTFIKHMLKSDYPGAHIGPEPTTDRFVVVMSGPDERSIPGNTAAVQADLPFGGLTKFGTSFLSKFECSQMPHPLLEHITFVDSPGVLSGEKQRTERSYDFTGVTSWFAAKSDLILLMFDPHKLDISDEFKRVIASLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVMRVYIGSFNDKPLNDAISGPLGSELFEKEQENLLSDLKDIPKKACDRKINEFVKRARAAKIHACIISHLKKKMPAMMGKAKAQQKLIDNLEDEFAKVQKEFHLPAGDFPNVDHFKETLNGYNIGKFEKLKPKMTQSVDDMLAYDVPNLLKTFRNPYG* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1348 538 Pfam Dynamin family 193 352 IPR045063 -
Lja6g1348 538 Gene3D - 157 529 - -
Lja6g1348 538 Pfam N-terminal EH-domain containing protein 156 188 IPR031692 -
Lja6g1348 538 ProSiteProfiles EF-hand calcium-binding domain profile. 48 83 IPR002048 GO:0005509
Lja6g1348 538 PANTHER CALCIUM-BINDING EF HAND PROTEIN 19 536 - -
Lja6g1348 538 Pfam Domain of unknown function (DUF5600) 428 529 IPR040990 -
Lja6g1348 538 Gene3D - 11 108 - -
Lja6g1348 538 Gene3D - 193 421 IPR027417 -
Lja6g1348 538 PANTHER EH DOMAIN 19 536 - -
Lja6g1348 538 Coils Coil 461 481 - -
Lja6g1348 538 SUPERFAMILY EF-hand 12 95 IPR011992 -
Lja6g1348 538 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 187 423 IPR030381 GO:0005525
Lja6g1348 538 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 460 IPR027417 -
Lja6g1348 538 Pfam Cytoskeletal-regulatory complex EF hand 19 80 IPR000261 GO:0005515
Lja6g1348 538 ProSiteProfiles EH domain profile. 15 105 IPR000261 GO:0005515
Lja6g1348 538 CDD EH 19 85 IPR000261 GO:0005515
Lja6g1348 538 CDD EHD 192 436 - -
Lja6g1348 538 SMART eh_3 8 103 IPR000261 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1348 Lja-Chr6 38558386 38564490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1348 1 537 EF-hand Containing Proteins AT3G20290 77.390 0.0 866
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1348 K12483 - gmx:100816958 920.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1348 6 38558386 38564490 Lja6g1348 6 38558386 38564490 ECH