Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1347 ATGCTTCCTCAGCGCATGAAGAAAGCAATCACTGATAATCCGAAGAAGCTTGCCAACTTGATTGACCTAGTGAACCTTCCATCCACGCTCAGAGACTTCGTGGGTCAATCTCAGATTTCTCGTTTGGGTTGTTTCATGCGCGTTTGGTCCTACATCAAAACCAACAATCTCCAGCAGGATCCAAACAACAAGAATGTGGTCAACTGTGATGAGAAGTTGAAGAGTATTTTGTTGGGGAAACCTCAGGTTGAGTTAGCAGAACTTCCTTCACTTATCAAGCTTCATTTTCCAAAAGAGTCCAAGTGA 306 0.4346 MLPQRMKKAITDNPKKLANLIDLVNLPSTLRDFVGQSQISRLGCFMRVWSYIKTNNLQQDPNNKNVVNCDEKLKSILLGKPQVELAELPSLIKLHFPKESK* 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1347 101 ProSiteProfiles SWIB/MDM2 domain profile. 19 98 IPR003121 -
Lja6g1347 101 PANTHER OS09G0133000 PROTEIN 2 100 - -
Lja6g1347 101 Pfam SWIB/MDM2 domain 24 96 IPR003121 -
Lja6g1347 101 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 2 100 - -
Lja6g1347 101 SUPERFAMILY SWIB/MDM2 domain 16 98 IPR036885 -
Lja6g1347 101 SMART swib_2 20 101 IPR019835 -
Lja6g1347 101 CDD SWIB-MDM2_like 24 96 - -
Lja6g1347 101 Gene3D SWIB/MDM2 domain 5 101 IPR036885 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Lja6g1347 SWIB 2.9e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1347 - - adu:107471538 188.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1347 6 38553558 38555986 Lja6g1347 6 38553558 38555986 ECH