Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1346 ATGCTTAGGGTCTTGTCTCGTGCCTCCAGAAGCTTCATGCTTCTCTCTGCTTCTCACAAACCCCAACCTTTTTCCACCCCCTTCTCCTCGCATCACTTCCATTCCATCGTTCATCAATCACCCAACAAGCTGATTCCACTTCAAGTCAATCTGTTGAACCGATCCATGAATTCATCCTTGACTCCAATTTTTGGATTTTCTTCGTCGGCCTCGCCTGAACCGGAAAGTCAGAATGAACAAGATAAAGCTGCTGCTGATCAAACCAAAGAACCAGATGCAGAGCCAGAGAGTGAATGTGATAATCTATCCAGGGATGATTTAATAAAGCTTGTTGCTGAGAAGGAAGAACTTTTGAAGTCGAAGCAGGAAGACATTGTGGAAATGAAGGATAAGGTTATGCGTTCTTATGCTGAGATGGAGAATGTTCTGAGCAGGACAAGACGCGATGCAGAGAATTCGAAAAAATTTGCTATACAGAATTTTGCGAAGGGTTTACTAGATGTTGCTGACAATTTGGGAAGAGCTTCCTCAGTTGTAAAGGATAGTTTTTCAAAAATTGAATCACCTAATGACTCTGTTGAAGCAGCAAAACTCCTGAAAACACTTCTGGAAGGTGTTGAAATGACCGAGAAACAACTTGCAGAGGTACTTAAAAAGCATGGTGTTGAAAAATATGATCCTACAAATGAACCATTTGATCCAAACAGGCATAATGCCATCTTCCAAATACCTGATGCTTCCAAGCCCCCAGGCACTGTTGGAGTTGTTTTGAAGGCAGGATATATGCTTTATGATCGCGTTCTTCGTCCAGCTGAAGTTGGTGTGACGCAAGAAGTGGAGGACAATAACAGCTGA 855 0.4257 MLRVLSRASRSFMLLSASHKPQPFSTPFSSHHFHSIVHQSPNKLIPLQVNLLNRSMNSSLTPIFGFSSSASPEPESQNEQDKAAADQTKEPDAEPESECDNLSRDDLIKLVAEKEELLKSKQEDIVEMKDKVMRSYAEMENVLSRTRRDAENSKKFAIQNFAKGLLDVADNLGRASSVVKDSFSKIESPNDSVEAAKLLKTLLEGVEMTEKQLAEVLKKHGVEKYDPTNEPFDPNRHNAIFQIPDASKPPGTVGVVLKAGYMLYDRVLRPAEVGVTQEVEDNNS* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1346 284 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 222 277 IPR009012 GO:0006457
Lja6g1346 284 Pfam GrpE 83 276 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lja6g1346 284 MobiDBLite consensus disorder prediction 79 104 - -
Lja6g1346 284 Gene3D Head domain of nucleotide exchange factor GrpE 221 276 IPR009012 GO:0006457
Lja6g1346 284 PRINTS GrpE protein signature 229 244 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lja6g1346 284 PRINTS GrpE protein signature 133 149 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lja6g1346 284 PRINTS GrpE protein signature 256 275 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lja6g1346 284 Hamap Protein GrpE [grpE]. 73 277 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lja6g1346 284 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 112 221 IPR013805 -
Lja6g1346 284 Gene3D - 109 220 IPR013805 -
Lja6g1346 284 PANTHER GRPE PROTEIN 4 279 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lja6g1346 284 MobiDBLite consensus disorder prediction 63 104 - -
Lja6g1346 284 MobiDBLite consensus disorder prediction 63 78 - -
Lja6g1346 284 ProSitePatterns grpE protein signature. 232 275 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lja6g1346 284 Coils Coil 104 131 - -
Lja6g1346 284 PANTHER GRPE PROTEIN HOMOLOG 4 279 - -
Lja6g1346 284 CDD GrpE 127 275 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1346 K03687 - gmx:100812682 377.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1346 6 38546958 38550245 Lja6g1346 6 38546958 38550245 ECH