Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1344 ATGGCGGTGACAGATGCTGAGAATCCTCTTCTGGGAGAAAACACCTGTGGTTCTTTGTTGAATAAGCTGCAGGAAATATGGGATGAGGTTGGTGAGAGTGATGCGGAGCGAGACAAGTTGCTTCTTCAGATAGACCAGGAATGCTTGGATGTGTACAAGAGAAAGGTTGAGGAGGCTGCAAAATCAAGGGCACAGCTACTTCAAGTCTTGTCTGATGCTAAGCTTGAGCTTTCTAGTCTTCTATCAGCTCTTGGTGATAAGAGCTTCGCTGAAATTCCTGAAAATACTTCTGGAACTATCAAGGAACAGCTTGCAGCTATAGCACCAATACTGGAACAGTTGTGGCAACAAAAGGAGGAAAGAATAAAGGAGTTTTCAGATGTTCAGTCACAAATCCAAAAAATATGTGGAGAGATAACTGCGGATTTGAACCCTGATCAGACAGGACCATTTGTAGTTGATGAGTCTGACCTGTCACTGAAGAAGTTGGATGAGTATCACTCCCAACTCCAAGAACTTCAAAAGGAAAAGAGTGAGAGGTTGCACAAGGTTCTTGAATTTGTGAGCACGGTGCATGATCTTTGTGCTGTTCTTGGTATGGACTTTTTCAGTATTATGACTGAGGTTCATCCAAGCTTAAATGATTCTACTGATGTTCATTCCAAAAGCATAAGCAATGGCACCCTAGCTAGGTTGGCTAAGACAGTCTCAACACTCAAAGAAGATAAAAAGCAGAGGTTGTACAAGCTGCAAGGGTTAGCTTCACAGCTAATTGATCTGTGGAATCTAATGGATACCCCTGAAGAAGAAAGGAGGCTATTTGACCATGTCACCTGCAATATTTCAGCTTCTGTAGATGAAGTTTCTATTCCTGGGGCACTTGCTCTGGATCTGATTGAGCAGGCTGAAGTAGAAGTTGAAAGGCTTGATCAGCTGAAAGCCAGCAGGATGAAAGAGATTGCTTTCAAAAAGCAAACCGAACTTGAAGAAATATTTGCCCATGCTCATATGGAAATAGACCCAGAAGCTGCTCGAGAGAAGATTTTATCACTGATTGATTCTGGAAAATTTGAACCAGCTGAATTACTGGCGGATATGGACAAACAGATAGCAAATGCAAAAGAAGAAGCTTTAAGCCGGAAGGAAATATTGGACAAAGTTGAGAAATGGATGTCAGCATGTGAAGAAGAGAGTTGGCTTGAAGACTATAATCGGGATGAAAACAGGTATAATGCAAGTAGAGGTGCACACTTGAACCTCAAACGTGCAGAGAAAGCTCGGATACTGGTCAACAAAATTCCAGCTATGGTTGATACGCTGGTTGCCAAAACTCGAGCTTGGGAAGAAGTACATGGCGTGTCATTTACATATGATGGTGTTCCTCTTCTTGCCATGTTAGATGAATATGCCATACTGAGGCAGGAGCGGGAAGAGGAAAAACGAAGGATGAAGGACCAGAAAAAGTATTCTGAGCAGCCACAGAACACTGAACAGGAATCTTCCTTGGGTTCAAGACCTAGCCCTGTGCGGCCACTTGGCAACAAGAAGGTACTTGGCCCTCGTCCTACTGGAGGAGCAAACGGTACTCCTAACCGACGACTATCTCTTAATGCTCATCAGAATGGAAGCAGGTCCACCGTGAAAGATGGAAAAAGGGATAATAACACTAGACACTCCATGTCTAAAGAAGATGCTGCTTCCCATGTTTCTGGTACTGAACCAGTCCCAACATCACCTTAG 1740 0.4345 MAVTDAENPLLGENTCGSLLNKLQEIWDEVGESDAERDKLLLQIDQECLDVYKRKVEEAAKSRAQLLQVLSDAKLELSSLLSALGDKSFAEIPENTSGTIKEQLAAIAPILEQLWQQKEERIKEFSDVQSQIQKICGEITADLNPDQTGPFVVDESDLSLKKLDEYHSQLQELQKEKSERLHKVLEFVSTVHDLCAVLGMDFFSIMTEVHPSLNDSTDVHSKSISNGTLARLAKTVSTLKEDKKQRLYKLQGLASQLIDLWNLMDTPEEERRLFDHVTCNISASVDEVSIPGALALDLIEQAEVEVERLDQLKASRMKEIAFKKQTELEEIFAHAHMEIDPEAAREKILSLIDSGKFEPAELLADMDKQIANAKEEALSRKEILDKVEKWMSACEEESWLEDYNRDENRYNASRGAHLNLKRAEKARILVNKIPAMVDTLVAKTRAWEEVHGVSFTYDGVPLLAMLDEYAILRQEREEEKRRMKDQKKYSEQPQNTEQESSLGSRPSPVRPLGNKKVLGPRPTGGANGTPNRRLSLNAHQNGSRSTVKDGKRDNNTRHSMSKEDAASHVSGTEPVPTSP* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1344 579 MobiDBLite consensus disorder prediction 493 507 - -
Lja6g1344 579 MobiDBLite consensus disorder prediction 545 564 - -
Lja6g1344 579 Pfam Microtubule associated protein (MAP65/ASE1 family) 18 508 - -
Lja6g1344 579 Coils Coil 462 489 - -
Lja6g1344 579 MobiDBLite consensus disorder prediction 528 544 - -
Lja6g1344 579 PANTHER PROTEIN REGULATOR OF CYTOKINESIS 1 PRC1-RELATED 6 579 IPR007145 GO:0000226|GO:0008017
Lja6g1344 579 Coils Coil 299 319 - -
Lja6g1344 579 Coils Coil 156 183 - -
Lja6g1344 579 MobiDBLite consensus disorder prediction 477 579 - -
Lja6g1344 579 Gene3D - 370 504 - -
Lja6g1344 579 MobiDBLite consensus disorder prediction 477 492 - -
Lja6g1344 579 PANTHER MICROTUBULE-ASSOCIATED PROTEIN, MAP65/ASE1/PRC1-RELATED 6 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1344 Lja-Chr6 38493085 38498030 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1344 13 546 EF-hand Containing Proteins AT5G62250 41.621 3.98e-116 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1344 K16732 - gmx:100806071 932.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1344 6 38493085 38498030 Lja6g1344 6 38493085 38498030 ECH
Lja6g1344 6 38493085 38498030 Lja6g1344 6 38493085 38498030 PCT