Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1341 ATGGCGAGCGAAACCGAGCCTGCGAAGTTGCTCTTGCCTTACCTTCAACGCGCCGATGAGTTGCAAAAACACGAACCTCTCGTCGCTTATTACTGTCGATTATATGCGATGGAGAGGGGGATGAAGATTCCAAACAGTGAGCGCACCAAGACTACCAATGCTTTGTTAGTTTCCCTCATGAACCAGCTTGAAAAGGATAGGAAGACAACCAAGTTGGGGCCTGAAGATAATTTATATGTTGAGGGATTTGCATTAAATGTGTTTGGAAAGGCAGACAAACAAGATCACGCTGGAAGAGCAGATTTGAATACAGCAAAGACATTTTATGCTGCTAGCATCTTTTTTGAGATTCTTAATCAATTTGGGACACTTGAACCTGATCTGGAGCAGAAACAGAAATATGCAGCCTGGAAAGCAGTAGATATAAGAAAGGCTTTGAAAGAAGGAAGGAAGCCCACACCTGGCCCACCTGCTGGTGATAATGATATGTCAATTCCATCAAATGCTCCTAGCAATACATATGACCTTGGAACTACTGGAACTTCAGTTACCAGTCCCGGACCAGAATCTGATCCATCTCATGATTATCATGACCCTGTCAACTACCAGCATTCGCGAAACGTTCATCCTGCAGCTGACTTCCATGATACTATTGACAACCAGCCTTCTGCAAATAACCCACCATCTATGCAGTTTCATGATAGAGTTAGTAATAATCTGAATTCTTCCAACATATCTTCATCGTCTCCTCCTTATCCATCTACAGGTTACCCTTCCCAAGATTATTACCATCCTCCACCATCCCAAGATTACCATCCTCCACCACCCCAAGATTACCATCCTCCACCACCCCAAGATTTCCTTCCTGGTCCACCTTCCCAAGATTATAATTCACCACCACCTGCCAGATCAGAAGGTCCTTATTCTCCGGGATACGACCATCAACATTACTCATCAGATCCACAGCATTTAGCTCCCAATTATCCTTCACATGAAACTCCCTCATATCCACTCCCACATTTTCAGTCTTATCCTAGTTTTTCAGAAAGCACCCTACCATCAGTCCCATCAAACTACATATATCAAGGGTCTGATGCTGCTTCTTATTCTTCACAGTCAGCTCCTCTGACTACAAACCATTCATCAAGTACCCTGCGAAATTCCCTCAGCAGAAATGGAACGATCTCTGAACCTAAGTCAACTACTCAGACATACCAATATGACAGTAACTACGACCCTCCACCTTTAAAGTTAGCAGAGGCACAGAAAGCAGCAAGATTTGCTGTTGCGGCACTTGCGTTTGATGATGTGCCAACTGGAGTTGACTTTTTGAGGAAATCACTTGAGTTGTTGACTAATCCATCATCTGGTGAAAACAATTAA 1383 0.436 MASETEPAKLLLPYLQRADELQKHEPLVAYYCRLYAMERGMKIPNSERTKTTNALLVSLMNQLEKDRKTTKLGPEDNLYVEGFALNVFGKADKQDHAGRADLNTAKTFYAASIFFEILNQFGTLEPDLEQKQKYAAWKAVDIRKALKEGRKPTPGPPAGDNDMSIPSNAPSNTYDLGTTGTSVTSPGPESDPSHDYHDPVNYQHSRNVHPAADFHDTIDNQPSANNPPSMQFHDRVSNNLNSSNISSSSPPYPSTGYPSQDYYHPPPSQDYHPPPPQDYHPPPPQDFLPGPPSQDYNSPPPARSEGPYSPGYDHQHYSSDPQHLAPNYPSHETPSYPLPHFQSYPSFSESTLPSVPSNYIYQGSDAASYSSQSAPLTTNHSSSTLRNSLSRNGTISEPKSTTQTYQYDSNYDPPPLKLAEAQKAARFAVAALAFDDVPTGVDFLRKSLELLTNPSSGENN* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1341 460 Pfam Vta1 C-terminal domain 418 452 IPR041212 -
Lja6g1341 460 Gene3D - 3 152 IPR023175 -
Lja6g1341 460 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VTA1 HOMOLOG 275 455 IPR044538 GO:0032511
Lja6g1341 460 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VTA1 HOMOLOG 1 301 IPR044538 GO:0032511
Lja6g1341 460 Pfam Vta1 like 13 148 IPR039431 -
Lja6g1341 460 MobiDBLite consensus disorder prediction 164 189 - -
Lja6g1341 460 Gene3D Immunoglobulin FC, subunit C 416 453 - -
Lja6g1341 460 MobiDBLite consensus disorder prediction 267 306 - -
Lja6g1341 460 MobiDBLite consensus disorder prediction 218 256 - -
Lja6g1341 460 MobiDBLite consensus disorder prediction 336 410 - -
Lja6g1341 460 MobiDBLite consensus disorder prediction 147 413 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1341 1 129 Glycosyltransferase AT2G31960 28.261 3.87e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1341 K12199 - gmx:100783739 595.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1341 6 38454093 38459053 Lja6g1341 6 38454093 38459053 ECH