Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1340 ATGGCTCACGTGGGAGACAATGTTGTAGCGTCCAACATGGAGCTAGAGAGGTTGCTTAGCATGAAAGGAGGTAAAGGAGAGGCTAGCTATGCCAACAATTCCCAAGCACAGGCCATGCATGCTAAGTCCATGCTTCACCTTCTCAAAGAAGCTCTAGATGGAGTTCAGCTTCATGCCACTGACATCCCATTTGTAGTGGTGGACCTGGGGTGTTCATGTGGCGACAACACCATCAACGTGGTGGATGTGATCATCAAGCACATCATCAAGCGCTACGAGGCTTTGGGACTCCACCCACCTGAGTTTTCTGCTTTCTTCTCAGACCTACCTAGCAATGATTTCAACACCCTCTTCCAGCTCCTTCCTCCTCTGGCCAACTATGGAGTTAGCATGGAAGAGTGCCTTGCTGCCAACAACCACCGCTCCTACTTTGCTGCTGGAGTCCCGGGCTCTTTCTACCGGAGGCTTTTTCCGGCGAAATCCGTTCACATTTTCCACTCAGCTTTTTCTTTGCATTGGTTATCTCAGTTACCAGAATCTGTTGTGGACAAGAGGTCAAGAGCATACAACAAGGGCAGGGTGTTTATCCATGGTGCTAGTGAGATGACAGCAAATGCCTACAAGAAACAATTCCAGACAGACTTGGCAGGCTTCCTGAGCTCAAGATCAGTGGAGATGAAGAGAGGGGGGTCCATGTTCTTGGTTTGCCTAGGAAGAACTTCTGTGGACCCCACAGACCAGGGTGGGGCTGGCCTTCTCTTTGGGACCCACTTTCAGGATGCTTGGGATGATCTTGTCCAGGAGGGATTAATTAGCAATGAAAAAAGAGACAATTTCAACATTCCAGTTTATGCACCAAGCCTGCAAGACTTCAAGGAGGTGGTTGAAGCTAATGGTTCTTTTACCATAAACAAGCTTGAGGTTTTCAAAGGAGGAAGTCCTCTTGTTGTGAACCAGCCTGATGATGCAAATGAAGTAGGCAGGGCTCTAGCCAACAGCTGCAGGAGTGTGTCTGGGGTCCTTGTTGATGCTCATATTGGTGACAAGCTTAGTGAGGAGCTTTTTCAGAGAGTGGAGCGCCGAGCCACACACCATGCCAAAGAGTTACTAGAGCAGCTTCAGTTCTTTCACATTGTTGCATCCCTTTCGTTTGCTCTTTGA 1161 0.4866 MAHVGDNVVASNMELERLLSMKGGKGEASYANNSQAQAMHAKSMLHLLKEALDGVQLHATDIPFVVVDLGCSCGDNTINVVDVIIKHIIKRYEALGLHPPEFSAFFSDLPSNDFNTLFQLLPPLANYGVSMEECLAANNHRSYFAAGVPGSFYRRLFPAKSVHIFHSAFSLHWLSQLPESVVDKRSRAYNKGRVFIHGASEMTANAYKKQFQTDLAGFLSSRSVEMKRGGSMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLISNEKRDNFNIPVYAPSLQDFKEVVEANGSFTINKLEVFKGGSPLVVNQPDDANEVGRALANSCRSVSGVLVDAHIGDKLSEELFQRVERRATHHAKELLEQLQFFHIVASLSFAL* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1340 386 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 11 384 IPR005299 GO:0008168
Lja6g1340 386 Pfam SAM dependent carboxyl methyltransferase 63 382 IPR005299 GO:0008168
Lja6g1340 386 Gene3D Vaccinia Virus protein VP39 33 312 IPR029063 -
Lja6g1340 386 Gene3D - 19 367 IPR042086 -
Lja6g1340 386 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 13 383 IPR029063 -
Lja6g1340 386 PANTHER INDOLE-3-ACETATE O-METHYLTRANSFERASE 1 11 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1340 Lja-Chr6 38447223 38451030 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1340 K18848 - gmx:100801476 700.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1340 6 38447223 38451030 Lja6g1340 6 38447223 38451030 ECH
Lja6g1340 6 38447223 38451030 Lja6g1340 6 38447223 38451030 PCT